Os01g0911200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Ribophorin II family protein.
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Os01g0911200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Ribophorin II family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 43.7 | 0.311 | 13.5 | 0.942 | 0.77 | 0.804 | -0.687 | -3.3 | 0.66 | 18.6 | 94.44 | 327 | -- | -- |
| 48.68 | 0.325 | 13.5 | 0.897 | 0.826 | 1.02 | -0.0826 | -- | 0.637 | 18.7 | 94.64 | 329 | -- | -- |
| 44.58 | 0.311 | 13.5 | 0.943 | 0.772 | 0.868 | -- | -2.68 | 0.656 | 18.7 | 94.56 | 328 | -- | -- |
| 48.53 | 0.324 | 13.5 | 0.899 | 0.784 | 1.07 | -- | -- | 0.642 | 18.7 | 94.75 | 329 | -- | -- |
| 70.64 | 0.391 | 13.5 | 0.935 | -- | -0.0988 | -- | -3.15 | 0.595 | -- | 94.31 | 321 | -- | -- |
| 53.67 | 0.343 | 13.5 | 0.894 | 0.668 | -- | -0.0321 | -- | 0.594 | 18.7 | -- | -- | -- | -- |
| 53.68 | 0.343 | 13.5 | 0.894 | 0.668 | -- | -- | -- | 0.594 | 18.7 | -- | -- | -- | -- |
| 72.57 | 0.397 | 13.5 | 0.907 | -- | 0.431 | -- | -- | 0.598 | -- | 39.91 | 1332 | -- | -- |
| 69.44 | 0.388 | 13.5 | -- | 0.824 | 1.06 | -- | -- | 0.566 | 18.7 | 94.47 | 315 | -- | -- |
| 77 | 0.41 | 13.5 | 0.879 | -- | -- | -- | -- | 0.581 | -- | -- | -- | -- | -- |
| 74.75 | 0.404 | 13.6 | -- | 0.657 | -- | -- | -- | 0.495 | 18.8 | -- | -- | -- | -- |
| 85.24 | 0.43 | 13.5 | -- | -- | -0.615 | -- | -- | 0.5 | -- | 95.77 | 20698 | -- | -- |
| 97.37 | 0.461 | 13.5 | -- | -- | -- | -- | -- | 0.483 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 43.22 | atmosphere | 1005.0 | 270 | > th | dose dependent | rect. | 1 | 5 |
| 5 | 43.70 | atmosphere | 1005.0 | 10 | > th | dose dependent | rect. | 3 | 6 |
| 6 | 43.88 | atmosphere | 1005.0 | 270 | > th | dose dependent | rect. | 3 | 2 |
| 10 | 44.07 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 11 | 44.07 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 14 | 44.15 | humidity | 90.0 | 10 | < th | dose independent | rect. | 2 | 7 |
| 23 | 44.58 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 20 | 6 |
| 27 | 44.68 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 2 | 2 |
| 29 | 44.70 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 2 | 2 |
| 31 | 44.78 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 32 | 44.79 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 11 | 3 |
| 60 | 45.43 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 12 | 1 |
| 114 | 46.12 | humidity | 90.0 | 720 | > th | dose independent | rect. | 20 | 6 |
| 119 | 46.17 | atmosphere | 1005.0 | 270 | > th | dose independent | rect. | 23 | 9 |
| 124 | 46.20 | atmosphere | 1005.0 | 270 | > th | dose independent | rect. | 1 | 6 |
| 203 | 46.61 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 206 | 46.62 | temperature | 20.0 | 10 | > th | dose independent | rect. | 20 | 8 |
| 217 | 46.68 | humidity | 90.0 | 720 | > th | dose dependent | sin | 15 | NA |
| 232 | 46.73 | atmosphere | 1005.0 | 270 | > th | dose independent | rect. | 3 | 2 |
| 286 | 46.95 | temperature | 25.0 | 10 | > th | dose independent | rect. | 1 | 8 |
| 295 | 46.99 | atmosphere | 1005.0 | 10 | < th | dose dependent | rect. | 1 | 7 |
| 326 | 47.14 | atmosphere | 1005.0 | 90 | < th | dose dependent | rect. | 24 | 9 |
| 350 | 47.21 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 11 | 17 |
| 354 | 47.22 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 11 | 13 |
| 355 | 47.22 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 11 | 15 |
| 471 | 47.54 | humidity | 90.0 | 10 | < th | dose independent | rect. | 16 | 17 |
| 528 | 47.66 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 12 | 2 |
| 532 | 47.67 | humidity | 90.0 | 720 | < th | dose independent | rect. | 20 | 4 |
| 591 | 47.75 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 599 | 47.77 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 9 | 1 |
| 623 | 47.82 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 12 | 12 |
| 624 | 47.82 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 12 | 15 |
| 642 | 47.84 | radiation | 1.0 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 719 | 47.97 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 12 | 2 |
| 787 | 48.06 | temperature | 20.0 | 10 | > th | dose independent | rect. | 20 | 10 |
| 809 | 48.09 | temperature | 20.0 | 10 | > th | dose independent | rect. | 9 | 19 |
| 921 | 48.25 | wind | 5.0 | 270 | < th | dose independent | rect. | 14 | 17 |
| 922 | 48.25 | radiation | 10.0 | 1440 | < th | dose dependent | sin | 19 | NA |
| 972 | 48.33 | humidity | 90.0 | 720 | < th | dose independent | rect. | 23 | 1 |
| 994 | 48.34 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 12 | 4 |