BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0910500 Os01g0910500|AK099048
         (408 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0910500  Conserved hypothetical protein                      412   e-115

>Os01g0910500 Conserved hypothetical protein
          Length = 408

 Score =  412 bits (1059), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 236/408 (57%), Positives = 236/408 (57%)

Query: 1   MAMARRXXXXXXXXXXXXXXXXSKPQVNYHSQXXXXXXXXXXKMDEMSVHENAVQKMSSS 60
           MAMARR                SKPQVNYHSQ          KMDEMSVHENAVQKMSSS
Sbjct: 1   MAMARRGNGGYQYGAYSYGYGYSKPQVNYHSQSSESVTTVVTKMDEMSVHENAVQKMSSS 60

Query: 61  FREEKVYEQQGGAGGDVQVCRNGGAAAGAVQKHTXXXXXXXXXXXXSNXXXXXXXXXXXX 120
           FREEKVYEQQGGAGGDVQVCRNGGAAAGAVQKHT            SN            
Sbjct: 61  FREEKVYEQQGGAGGDVQVCRNGGAAAGAVQKHTYEEKKEEEVYEESNHGGGGGGCGGYA 120

Query: 121 XXXXXXXXXKHATYQHEVLKXXXXXXXXXXXXXXXXXXXXXVKKQYSYREEEEYDAGGYA 180
                    KHATYQHEVLK                     VKKQYSYREEEEYDAGGYA
Sbjct: 121 RQHGAGGGQKHATYQHEVLKGYESAGGGYAAARHNGAGAGGVKKQYSYREEEEYDAGGYA 180

Query: 181 RHNGGGVQKQYSSYRRDEEECDXXXXXXXXXXXXXXXXXVKQHATYKQHQAIEGVNGCGA 240
           RHNGGGVQKQYSSYRRDEEECD                 VKQHATYKQHQAIEGVNGCGA
Sbjct: 181 RHNGGGVQKQYSSYRRDEEECDAAAGGGYGRHHGAGGGAVKQHATYKQHQAIEGVNGCGA 240

Query: 241 GGYNYNRHXXXXXXXXXXXXXXXXXXXXXXNASNKQHFTXXXXXXXXXXXXTQYHHQSYX 300
           GGYNYNRH                      NASNKQHFT            TQYHHQSY 
Sbjct: 241 GGYNYNRHQAVAVAGGGQHHYGGATAAAYGNASNKQHFTAAAAGHHSSGGHTQYHHQSYE 300

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXGHCPPSRQGSVHSYHQAAYQHEEKQHAGGRNHYHA 360
                                    GHCPPSRQGSVHSYHQAAYQHEEKQHAGGRNHYHA
Sbjct: 301 CEEEDSDEDDCEDDDDDESDDDDDDGHCPPSRQGSVHSYHQAAYQHEEKQHAGGRNHYHA 360

Query: 361 YERHEEHGGGAQRYQKYESSTQVXXXXXXXXXXXXXXXNAKPCFRIMA 408
           YERHEEHGGGAQRYQKYESSTQV               NAKPCFRIMA
Sbjct: 361 YERHEEHGGGAQRYQKYESSTQVGYAGGGGGNGGCVRGNAKPCFRIMA 408



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.312    0.126    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,478,846
Number of extensions: 304529
Number of successful extensions: 805
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 791
Number of HSP's successfully gapped: 1
Length of query: 408
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 305
Effective length of database: 11,657,759
Effective search space: 3555616495
Effective search space used: 3555616495
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 157 (65.1 bits)