Os01g0910500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0910500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 116.15 | 0.506 | 13.9 | -1.54 | 0.549 | -1.99 | -0.272 | -0.508 | -0.147 | 13.4 | 23.93 | 910 | -- | -- |
| 116.33 | 0.502 | 13.9 | -1.62 | 0.545 | -1.95 | -0.385 | -- | -0.164 | 13.6 | 23.81 | 966 | -- | -- |
| 116.21 | 0.502 | 13.9 | -1.53 | 0.529 | -2.05 | -- | -0.696 | -0.15 | 13.5 | 23.64 | 962 | -- | -- |
| 116.9 | 0.504 | 13.9 | -1.63 | 0.543 | -1.93 | -- | -- | -0.162 | 13.5 | 23.85 | 962 | -- | -- |
| 133.48 | 0.538 | 13.9 | -1.51 | -- | -1.88 | -- | -0.673 | -0.104 | -- | 23.39 | 1051 | -- | -- |
| 167.42 | 0.607 | 13.8 | -1.08 | 0.367 | -- | -0.287 | -- | 0.202 | 14.6 | -- | -- | -- | -- |
| 167.71 | 0.606 | 13.8 | -1.09 | 0.366 | -- | -- | -- | 0.2 | 14.5 | -- | -- | -- | -- |
| 133.98 | 0.539 | 13.9 | -1.6 | -- | -1.75 | -- | -- | -0.127 | -- | 23.61 | 1040 | -- | -- |
| 177.55 | 0.621 | 13.8 | -- | 0.491 | -1.15 | -- | -- | 0.14 | 13.8 | 24.05 | 886 | -- | -- |
| 175.6 | 0.619 | 13.8 | -1.1 | -- | -- | -- | -- | 0.191 | -- | -- | -- | -- | -- |
| 198.81 | 0.66 | 13.8 | -- | 0.387 | -- | -- | -- | 0.321 | 14.6 | -- | -- | -- | -- |
| 187.72 | 0.638 | 13.8 | -- | -- | -0.97 | -- | -- | 0.146 | -- | 29.3 | 120 | -- | -- |
| 207.62 | 0.673 | 13.8 | -- | -- | -- | -- | -- | 0.313 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 116.39 | temperature | 25 | 720 | < th | dose dependent | rect. | 2 | 17 |
| 14 | 117.84 | temperature | 25 | 720 | < th | dose dependent | sin | 2 | NA |
| 94 | 121.59 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 98 | 121.72 | temperature | 25 | 720 | < th | dose dependent | rect. | 15 | 23 |
| 112 | 122.00 | temperature | 25 | 1440 | < th | dose dependent | rect. | 9 | 15 |
| 132 | 122.20 | temperature | 25 | 1440 | < th | dose dependent | rect. | 10 | 4 |
| 171 | 122.53 | temperature | 25 | 1440 | < th | dose dependent | rect. | 11 | 2 |
| 184 | 122.65 | temperature | 25 | 720 | < th | dose dependent | rect. | 6 | 23 |
| 311 | 124.24 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 16 |
| 314 | 124.28 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 14 |
| 424 | 125.11 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 17 |
| 472 | 125.59 | wind | 3 | 43200 | < th | dose dependent | rect. | 23 | 3 |
| 504 | 125.84 | wind | 3 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 507 | 125.88 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 16 |
| 523 | 126.02 | wind | 9 | 14400 | > th | dose dependent | rect. | 5 | 8 |
| 555 | 126.26 | wind | 3 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 565 | 126.30 | temperature | 20 | 4320 | < th | dose dependent | rect. | 4 | 1 |
| 575 | 126.39 | wind | 3 | 43200 | < th | dose dependent | rect. | 10 | 3 |
| 580 | 126.43 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 586 | 126.47 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 588 | 126.48 | wind | 9 | 14400 | > th | dose dependent | rect. | 9 | 4 |
| 591 | 126.49 | temperature | 20 | 4320 | < th | dose dependent | rect. | 4 | 3 |
| 596 | 126.54 | temperature | 20 | 720 | > th | dose independent | sin | 2 | NA |
| 610 | 126.70 | temperature | 10 | 720 | > th | dose dependent | sin | 7 | NA |
| 643 | 126.90 | humidity | 90 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 663 | 127.01 | temperature | 20 | 4320 | < th | dose dependent | rect. | 1 | 8 |
| 675 | 127.04 | humidity | 50 | 14400 | < th | dose dependent | rect. | 12 | 1 |
| 684 | 127.09 | temperature | 20 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 824 | 127.72 | temperature | 20 | 720 | < th | dose independent | sin | 2 | NA |
| 921 | 127.99 | wind | 9 | 14400 | < th | dose independent | rect. | 6 | 6 |
| 958 | 128.09 | humidity | 50 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 983 | 128.16 | temperature | 25 | 1440 | < th | dose dependent | rect. | 22 | 1 |
| 987 | 128.17 | temperature | 25 | 1440 | < th | dose dependent | rect. | 19 | 1 |
| 989 | 128.18 | temperature | 25 | 1440 | < th | dose dependent | rect. | 18 | 3 |