BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0901900 Os01g0901900|AK067661
         (468 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0901900  Nucleic acid-binding, OB-fold domain containin...   918   0.0  

>Os01g0901900 Nucleic acid-binding, OB-fold domain containing protein
          Length = 468

 Score =  918 bits (2373), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 453/468 (96%), Positives = 453/468 (96%)

Query: 1   MAATPATATFPHXXXXXXXXXXXXXXXIAVSVSPSGPDETPADDPPVIPSILVKNTEPED 60
           MAATPATATFPH               IAVSVSPSGPDETPADDPPVIPSILVKNTEPED
Sbjct: 1   MAATPATATFPHLGLRPKPLLRRRLRRIAVSVSPSGPDETPADDPPVIPSILVKNTEPED 60

Query: 61  VARRRSWVEHGWAPWEEIMTPEVAFARHSLNEGEEVPLQTPESQEAFRMLTPAYREKVES 120
           VARRRSWVEHGWAPWEEIMTPEVAFARHSLNEGEEVPLQTPESQEAFRMLTPAYREKVES
Sbjct: 61  VARRRSWVEHGWAPWEEIMTPEVAFARHSLNEGEEVPLQTPESQEAFRMLTPAYREKVES 120

Query: 121 EPGYEERLFATRDTPEPLETSWAGELPLRLVPPRDWPPPGWEVDPGELEFIREAHREFTE 180
           EPGYEERLFATRDTPEPLETSWAGELPLRLVPPRDWPPPGWEVDPGELEFIREAHREFTE
Sbjct: 121 EPGYEERLFATRDTPEPLETSWAGELPLRLVPPRDWPPPGWEVDPGELEFIREAHREFTE 180

Query: 181 RLDMAAVAAKGVTHVDKVENAPDDLGLDRYKMFLKQYKEWVEANRDRLEEESYKFDQDYY 240
           RLDMAAVAAKGVTHVDKVENAPDDLGLDRYKMFLKQYKEWVEANRDRLEEESYKFDQDYY
Sbjct: 181 RLDMAAVAAKGVTHVDKVENAPDDLGLDRYKMFLKQYKEWVEANRDRLEEESYKFDQDYY 240

Query: 241 PGRRKRGEDYKEDMLELPFFYPGQICRGRVISVHLYQGAFVDIGCVHDGWVPIKGNDWYW 300
           PGRRKRGEDYKEDMLELPFFYPGQICRGRVISVHLYQGAFVDIGCVHDGWVPIKGNDWYW
Sbjct: 241 PGRRKRGEDYKEDMLELPFFYPGQICRGRVISVHLYQGAFVDIGCVHDGWVPIKGNDWYW 300

Query: 301 IRHHIRPGMEVHVEILAKRDPYRFRFPLEMRFVYPNIDHLIFNRFDYPPIFHRKEDTNPE 360
           IRHHIRPGMEVHVEILAKRDPYRFRFPLEMRFVYPNIDHLIFNRFDYPPIFHRKEDTNPE
Sbjct: 301 IRHHIRPGMEVHVEILAKRDPYRFRFPLEMRFVYPNIDHLIFNRFDYPPIFHRKEDTNPE 360

Query: 361 QLWREGGRPPIPRKKPLKDMEKEPLVSDHPFVETLWLWHNAEQMILDHEEENPDKFKDTT 420
           QLWREGGRPPIPRKKPLKDMEKEPLVSDHPFVETLWLWHNAEQMILDHEEENPDKFKDTT
Sbjct: 361 QLWREGGRPPIPRKKPLKDMEKEPLVSDHPFVETLWLWHNAEQMILDHEEENPDKFKDTT 420

Query: 421 YESTVDSSIVHEENRVQHTEGYFKDTLLKKEVVISRSLIWMPLVLSVS 468
           YESTVDSSIVHEENRVQHTEGYFKDTLLKKEVVISRSLIWMPLVLSVS
Sbjct: 421 YESTVDSSIVHEENRVQHTEGYFKDTLLKKEVVISRSLIWMPLVLSVS 468



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.138    0.440 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 19,367,743
Number of extensions: 950021
Number of successful extensions: 2413
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 2413
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 364
Effective length of database: 11,605,545
Effective search space: 4224418380
Effective search space used: 4224418380
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 158 (65.5 bits)