Os01g0901900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Nucleic acid-binding, OB-fold domain containing protein.
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Os01g0901900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Nucleic acid-binding, OB-fold domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 181.67 | 0.633 | 12.9 | 2.6 | 3.78 | 1.68 | -0.253 | 0.95 | 0.505 | 21.5 | 25.5 | 312 | 8.13 | 6.97 |
| 182.91 | 0.63 | 12.9 | 2.57 | 3.76 | 1.68 | -0.337 | -- | 0.494 | 21.4 | 25.5 | 316 | 8.27 | 6.8 |
| 181.7 | 0.628 | 12.9 | 2.63 | 3.77 | 1.71 | -- | 1.01 | 0.514 | 21.4 | 25.5 | 321 | 8.22 | 6.77 |
| 182.44 | 0.629 | 12.9 | 2.47 | 3.73 | 1.87 | -- | -- | 0.467 | 21.5 | 25.5 | 371 | 8.12 | 6.28 |
| 246.98 | 0.732 | 12.8 | 2.24 | -- | 3.52 | -- | -1.29 | 0.573 | -- | -20.77 | 857 | 9.42 | 7.64 |
| 244.29 | 0.733 | 12.9 | 2.77 | 3.73 | -- | -0.472 | -- | 0.704 | 20.4 | -- | -- | -- | -- |
| 245 | 0.733 | 12.9 | 2.78 | 3.73 | -- | -- | -- | 0.704 | 20.4 | -- | -- | -- | -- |
| 233.77 | 0.712 | 12.8 | 2.77 | -- | 3.64 | -- | -- | 0.714 | -- | -32.55 | 831 | 9.53 | 7.86 |
| 339.88 | 0.859 | 13 | -- | 3.82 | 2.19 | -- | -- | 0.41 | 21.7 | 25.47 | 464 | 8.3 | 4.7 |
| 1020.9 | 1.49 | 12.8 | 2.76 | -- | -- | -- | -- | 0.666 | -- | -- | -- | -- | -- |
| 449.06 | 0.991 | 12.9 | -- | 3.72 | -- | -- | -- | 0.394 | 20.5 | -- | -- | -- | -- |
| 436.53 | 0.973 | 12.8 | -- | -- | 3.73 | -- | -- | 0.447 | -- | -24.63 | 842 | 9.32 | 8.23 |
| 1222.28 | 1.63 | 12.8 | -- | -- | -- | -- | -- | 0.359 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 187.22 | temperature | 25 | 270 | > th | dose independent | rect. | 8 | 7 |
| 7 | 192.49 | temperature | 20 | 270 | > th | dose dependent | rect. | 8 | 7 |
| 12 | 195.16 | temperature | 25 | 270 | > th | dose dependent | rect. | 9 | 4 |
| 33 | 199.44 | temperature | 25 | 270 | > th | dose dependent | rect. | 10 | 1 |
| 46 | 200.68 | temperature | 25 | 720 | < th | dose independent | rect. | 8 | 3 |
| 68 | 202.25 | temperature | 25 | 270 | > th | dose dependent | sin | 4 | NA |
| 70 | 202.26 | temperature | 25 | 10 | > th | dose dependent | rect. | 10 | 7 |
| 132 | 205.20 | temperature | 25 | 10 | > th | dose independent | rect. | 10 | 9 |
| 138 | 205.44 | temperature | 25 | 270 | > th | dose independent | sin | 1 | NA |
| 147 | 205.74 | temperature | 25 | 10 | > th | dose independent | rect. | 10 | 7 |
| 204 | 207.73 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 7 |
| 210 | 207.88 | temperature | 25 | 270 | < th | dose independent | rect. | 4 | 9 |
| 263 | 208.86 | temperature | 20 | 10 | > th | dose dependent | rect. | 20 | 13 |
| 290 | 209.32 | temperature | 20 | 30 | > th | dose independent | rect. | 4 | 8 |
| 293 | 209.41 | temperature | 25 | 270 | < th | dose independent | sin | 1 | NA |
| 296 | 209.46 | temperature | 25 | 720 | < th | dose dependent | rect. | 8 | 1 |
| 325 | 210.01 | temperature | 25 | 30 | < th | dose independent | rect. | 22 | 10 |
| 337 | 210.08 | temperature | 25 | 90 | < th | dose dependent | rect. | 23 | 10 |
| 338 | 210.12 | humidity | 90 | 30 | < th | dose independent | rect. | 6 | 6 |
| 348 | 210.29 | temperature | 25 | 270 | < th | dose independent | rect. | 4 | 15 |
| 425 | 211.13 | radiation | 40 | 270 | > th | dose dependent | sin | 7 | NA |
| 450 | 211.45 | temperature | 25 | 270 | < th | dose independent | rect. | 8 | 11 |
| 461 | 211.61 | temperature | 25 | 10 | < th | dose dependent | sin | 6 | NA |
| 478 | 211.76 | radiation | 40 | 270 | > th | dose dependent | rect. | 10 | 1 |
| 515 | 212.03 | radiation | 40 | 270 | > th | dose dependent | rect. | 14 | 23 |
| 546 | 212.26 | temperature | 30 | 10 | < th | dose independent | rect. | 6 | 8 |
| 549 | 212.27 | radiation | 40 | 270 | > th | dose dependent | rect. | 8 | 5 |
| 600 | 212.60 | temperature | 20 | 90 | > th | dose dependent | rect. | 4 | 5 |
| 608 | 212.66 | temperature | 25 | 30 | > th | dose independent | rect. | 4 | 5 |
| 615 | 212.74 | temperature | 25 | 30 | > th | dose independent | rect. | 24 | 9 |
| 620 | 212.78 | temperature | 25 | 30 | > th | dose independent | rect. | 20 | 13 |
| 680 | 213.29 | temperature | 20 | 30 | > th | dose independent | rect. | 6 | 6 |
| 714 | 213.59 | radiation | 40 | 270 | > th | dose dependent | no | NA | NA |
| 945 | 214.01 | humidity | 90 | 30 | < th | dose independent | rect. | 4 | 8 |
| 951 | 214.10 | temperature | 20 | 90 | < th | dose independent | sin | 6 | NA |
| 955 | 214.14 | radiation | 40 | 270 | < th | dose independent | rect. | 1 | 23 |
| 998 | 214.53 | temperature | 25 | 30 | > th | dose independent | rect. | 22 | 11 |