BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0892200 Os01g0892200|Os01g0892200
         (123 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0892200  Conserved hypothetical protein                      234   1e-62
Os05g0578301                                                      129   4e-31
Os05g0588250  Protein kinase-like domain containing protein        82   9e-17

>Os01g0892200 Conserved hypothetical protein
          Length = 123

 Score =  234 bits (597), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 117/123 (95%), Positives = 117/123 (95%)

Query: 1   MYGKTTKFLGPLLPSFLKIDILPEALRGNIDPTSCQEYLNNLWRKTEQAVPPESFVGNLQ 60
           MYGKTTKFLGPLLPSFLKIDILPEALRGNIDPTSCQEYLNNLWRKTEQAVPPESFVGNLQ
Sbjct: 1   MYGKTTKFLGPLLPSFLKIDILPEALRGNIDPTSCQEYLNNLWRKTEQAVPPESFVGNLQ 60

Query: 61  LSGKPLSRPCEPFFLSPDGAPTDGRGSGGGSVPVAEXXXXXXLSGAVVATIAVDAFSEFV 120
           LSGKPLSRPCEPFFLSPDGAPTDGRGSGGGSVPVAE      LSGAVVATIAVDAFSEFV
Sbjct: 61  LSGKPLSRPCEPFFLSPDGAPTDGRGSGGGSVPVAEKKKKKKLSGAVVATIAVDAFSEFV 120

Query: 121 PQI 123
           PQI
Sbjct: 121 PQI 123



>Os05g0578301 
          Length = 139

 Score =  129 bits (324), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 65/81 (80%), Positives = 67/81 (82%)

Query: 33  TSCQEYLNNLWRKTEQAVPPESFVGNLQLSGKPLSRPCEPFFLSPDGAPTDGRGSGGGSV 92
           +S  EYLNNL RKTEQAVPPESFVGNLQLSGKPLSRPCEPFF SPDG PTDGRGSGGGS+
Sbjct: 18  SSQAEYLNNLRRKTEQAVPPESFVGNLQLSGKPLSRPCEPFFPSPDGTPTDGRGSGGGSM 77

Query: 93  PVAEXXXXXXLSGAVVATIAV 113
           PVAE      LSG  VA IAV
Sbjct: 78  PVAEKKKKKKLSGVAVAAIAV 98



>Os05g0588250 Protein kinase-like domain containing protein
          Length = 449

 Score = 82.0 bits (201), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 41/48 (85%), Positives = 42/48 (87%), Gaps = 2/48 (4%)

Query: 51  PPESFVGNLQLSGKPLSRPCEPFFLSPDGA--PTDGRGSGGGSVPVAE 96
           PPESF GNLQL GKPLSRPCEPFF SP GA  PTDGRGSGGGSVPV+E
Sbjct: 206 PPESFAGNLQLCGKPLSRPCEPFFPSPAGAPTPTDGRGSGGGSVPVSE 253



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.317    0.138    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,133,853
Number of extensions: 249964
Number of successful extensions: 795
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 794
Number of HSP's successfully gapped: 3
Length of query: 123
Length of database: 17,035,801
Length adjustment: 88
Effective length of query: 35
Effective length of database: 12,440,969
Effective search space: 435433915
Effective search space used: 435433915
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 149 (62.0 bits)