BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0884500 Os01g0884500|AK069155
         (892 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0884500  Zinc finger, FYVE/PHD-type domain containing p...  1753   0.0  

>Os01g0884500 Zinc finger, FYVE/PHD-type domain containing protein
          Length = 892

 Score = 1753 bits (4540), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 849/892 (95%), Positives = 849/892 (95%)

Query: 1   MGRRSKQKVEDMAEELCFVCKDGGDIRVCDFKNCLKGYHPHCVGKEESFLDSAEQFICEL 60
           MGRRSKQKVEDMAEELCFVCKDGGDIRVCDFKNCLKGYHPHCVGKEESFLDSAEQFICEL
Sbjct: 1   MGRRSKQKVEDMAEELCFVCKDGGDIRVCDFKNCLKGYHPHCVGKEESFLDSAEQFICEL 60

Query: 61  HKCVSCKRNSEYHCLCCPSSSVCGECLGKVEFAQFRKQSQTKGLCNNCLKLALFVEKNSE 120
           HKCVSCKRNSEYHCLCCPSSSVCGECLGKVEFAQFRKQSQTKGLCNNCLKLALFVEKNSE
Sbjct: 61  HKCVSCKRNSEYHCLCCPSSSVCGECLGKVEFAQFRKQSQTKGLCNNCLKLALFVEKNSE 120

Query: 121 ANSDGETVEFRYTENYLVLFKDYWETIKDNEGLALIDLQQANICLRTSLSCKQGRDSEKP 180
           ANSDGETVEFRYTENYLVLFKDYWETIKDNEGLALIDLQQANICLRTSLSCKQGRDSEKP
Sbjct: 121 ANSDGETVEFRYTENYLVLFKDYWETIKDNEGLALIDLQQANICLRTSLSCKQGRDSEKP 180

Query: 181 PDEDYRADKNSLSVNDGAEQPFPVDVKVQPSEAXXXXXXXXXXXXTYVGWGSKELIEFLS 240
           PDEDYRADKNSLSVNDGAEQPFPVDVKVQPSEA            TYVGWGSKELIEFLS
Sbjct: 181 PDEDYRADKNSLSVNDGAEQPFPVDVKVQPSEAKMSLKRKKSNKKTYVGWGSKELIEFLS 240

Query: 241 CIGKDTTKPLDEFILTGVVKEYIQQKNLFKDRKRKSVICDDKLHSLFRKRKVKSNMILNL 300
           CIGKDTTKPLDEFILTGVVKEYIQQKNLFKDRKRKSVICDDKLHSLFRKRKVKSNMILNL
Sbjct: 241 CIGKDTTKPLDEFILTGVVKEYIQQKNLFKDRKRKSVICDDKLHSLFRKRKVKSNMILNL 300

Query: 301 LEIHLAANAAXXXXXXXXXXXXXGRIMRKRPCNTLKAAETSERDPKRNKKCFAALNHNNL 360
           LEIHLAANAA             GRIMRKRPCNTLKAAETSERDPKRNKKCFAALNHNNL
Sbjct: 301 LEIHLAANAASEDDFLDDSEDDEGRIMRKRPCNTLKAAETSERDPKRNKKCFAALNHNNL 360

Query: 361 KLIYLRRTLIMNLMGQDTFEQKVVGSLVRVKNDDNHYSYQMPKKHYQLGLVTGIRKSPQE 420
           KLIYLRRTLIMNLMGQDTFEQKVVGSLVRVKNDDNHYSYQMPKKHYQLGLVTGIRKSPQE
Sbjct: 361 KLIYLRRTLIMNLMGQDTFEQKVVGSLVRVKNDDNHYSYQMPKKHYQLGLVTGIRKSPQE 420

Query: 421 YKIKDKRTDILLCVSNLWDDIKISMLSEEDIEEDECNDLLLLAKKGLFKRPTVADLEEKA 480
           YKIKDKRTDILLCVSNLWDDIKISMLSEEDIEEDECNDLLLLAKKGLFKRPTVADLEEKA
Sbjct: 421 YKIKDKRTDILLCVSNLWDDIKISMLSEEDIEEDECNDLLLLAKKGLFKRPTVADLEEKA 480

Query: 481 ASIHVDIVNHWIDRELMRLEKEIERAHEKGWRQELHELFNKKRLLSTQDERQRRLAEVPE 540
           ASIHVDIVNHWIDRELMRLEKEIERAHEKGWRQELHELFNKKRLLSTQDERQRRLAEVPE
Sbjct: 481 ASIHVDIVNHWIDRELMRLEKEIERAHEKGWRQELHELFNKKRLLSTQDERQRRLAEVPE 540

Query: 541 AIPDTEESKRDEFGVAASNHLEENKGATGHVPNSVKVLMEDSRGATGHIADSVKVLMEGL 600
           AIPDTEESKRDEFGVAASNHLEENKGATGHVPNSVKVLMEDSRGATGHIADSVKVLMEGL
Sbjct: 541 AIPDTEESKRDEFGVAASNHLEENKGATGHVPNSVKVLMEDSRGATGHIADSVKVLMEGL 600

Query: 601 PGGATARVADVFNVDMAKSQDASGQVTDYLEVVEEETPEDASGQVADILDVVEEEPPEDA 660
           PGGATARVADVFNVDMAKSQDASGQVTDYLEVVEEETPEDASGQVADILDVVEEEPPEDA
Sbjct: 601 PGGATARVADVFNVDMAKSQDASGQVTDYLEVVEEETPEDASGQVADILDVVEEEPPEDA 660

Query: 661 SGQVADILELVEEETSEDASGQVASILEVVEEETPEAPGKDLCNGGIPGSGLQNKMHNAQ 720
           SGQVADILELVEEETSEDASGQVASILEVVEEETPEAPGKDLCNGGIPGSGLQNKMHNAQ
Sbjct: 661 SGQVADILELVEEETSEDASGQVASILEVVEEETPEAPGKDLCNGGIPGSGLQNKMHNAQ 720

Query: 721 DGGTAQGSDMCNGGNTSRRLNDRKSVIVIXXXXXXXXXXXXXXXXXXRAAPRAAMDVVMA 780
           DGGTAQGSDMCNGGNTSRRLNDRKSVIVI                  RAAPRAAMDVVMA
Sbjct: 721 DGGTAQGSDMCNGGNTSRRLNDRKSVIVIDSDSDEDEDPHPEQHEPERAAPRAAMDVVMA 780

Query: 781 PTHGAPVAMNGTSAPTLPCAKRGKNGTTAPKGRVPAIAALHALQSMNAPGEHEYIWNYAD 840
           PTHGAPVAMNGTSAPTLPCAKRGKNGTTAPKGRVPAIAALHALQSMNAPGEHEYIWNYAD
Sbjct: 781 PTHGAPVAMNGTSAPTLPCAKRGKNGTTAPKGRVPAIAALHALQSMNAPGEHEYIWNYAD 840

Query: 841 PQGKVQGPFTMEHMRNWHRNRFFPPDFRVWRLGQTQNDSVLLTEAMGLKFSS 892
           PQGKVQGPFTMEHMRNWHRNRFFPPDFRVWRLGQTQNDSVLLTEAMGLKFSS
Sbjct: 841 PQGKVQGPFTMEHMRNWHRNRFFPPDFRVWRLGQTQNDSVLLTEAMGLKFSS 892



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.316    0.133    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 30,667,882
Number of extensions: 1357371
Number of successful extensions: 4159
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 4140
Number of HSP's successfully gapped: 1
Length of query: 892
Length of database: 17,035,801
Length adjustment: 110
Effective length of query: 782
Effective length of database: 11,292,261
Effective search space: 8830548102
Effective search space used: 8830548102
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 161 (66.6 bits)