Os01g0884500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, FYVE/PHD-type domain containing protein.
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Os01g0884500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, FYVE/PHD-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 29.94 | 0.257 | 10.4 | 0.0153 | 0.93 | 0.386 | 0.391 | -0.00801 | 0.0887 | 8.73 | 83.92 | 1143 | -- | -- |
| 29.94 | 0.255 | 10.4 | 0.016 | 0.93 | 0.386 | 0.387 | -- | 0.0864 | 8.73 | 85 | 1148 | -- | -- |
| 30.41 | 0.257 | 10.4 | 0.0233 | 0.923 | 0.384 | -- | -0.144 | 0.0882 | 8.73 | 85 | 1150 | -- | -- |
| 30.44 | 0.257 | 10.4 | 0.0338 | 0.925 | 0.377 | -- | -- | 0.0869 | 8.72 | 85 | 1153 | -- | -- |
| 73.57 | 0.399 | 10.4 | 0.141 | -- | 0.333 | -- | 0.217 | 0.0773 | -- | 88.01 | 1445 | -- | -- |
| 32.91 | 0.269 | 10.4 | 0.0713 | 0.876 | -- | 0.348 | -- | 0.0811 | 8.42 | -- | -- | -- | -- |
| 33.29 | 0.27 | 10.4 | 0.082 | 0.876 | -- | -- | -- | 0.081 | 8.41 | -- | -- | -- | -- |
| 73.23 | 0.399 | 10.4 | 0.0487 | -- | 0.334 | -- | -- | 0.0874 | -- | 88 | 1430 | -- | -- |
| 30.47 | 0.257 | 10.4 | -- | 0.926 | 0.381 | -- | -- | 0.0846 | 8.72 | 84.41 | 1152 | -- | -- |
| 76.02 | 0.407 | 10.4 | 0.0866 | -- | -- | -- | -- | 0.0899 | -- | -- | -- | -- | -- |
| 33.47 | 0.271 | 10.4 | -- | 0.876 | -- | -- | -- | 0.0719 | 8.41 | -- | -- | -- | -- |
| 73.29 | 0.399 | 10.4 | -- | -- | 0.341 | -- | -- | 0.0867 | -- | 87 | 1431 | -- | -- |
| 76.21 | 0.407 | 10.4 | -- | -- | -- | -- | -- | 0.0803 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 29.34 | humidity | 80 | 1440 | < th | dose independent | rect. | 6 | 3 |
| 2 | 29.39 | humidity | 80 | 1440 | > th | dose independent | rect. | 6 | 3 |
| 3 | 29.39 | atmosphere | 1005 | 270 | > th | dose independent | rect. | 14 | 18 |
| 6 | 29.42 | humidity | 80 | 1440 | > th | dose independent | rect. | 6 | 8 |
| 7 | 29.42 | humidity | 80 | 1440 | > th | dose independent | rect. | 2 | 12 |
| 14 | 29.45 | humidity | 80 | 1440 | < th | dose independent | rect. | 6 | 8 |
| 18 | 29.46 | humidity | 80 | 1440 | < th | dose independent | rect. | 3 | 11 |
| 45 | 29.57 | humidity | 80 | 1440 | < th | dose independent | sin | 5 | NA |
| 56 | 29.62 | humidity | 80 | 1440 | < th | dose dependent | rect. | 20 | 15 |
| 57 | 29.63 | humidity | 80 | 1440 | > th | dose independent | sin | 5 | NA |
| 60 | 29.63 | humidity | 90 | 1440 | < th | dose dependent | rect. | 2 | 10 |
| 77 | 29.65 | humidity | 60 | 1440 | < th | dose independent | rect. | 16 | 19 |
| 85 | 29.66 | humidity | 50 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 89 | 29.68 | humidity | 50 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 99 | 29.70 | humidity | 60 | 1440 | > th | dose independent | rect. | 16 | 19 |
| 105 | 29.72 | humidity | 80 | 1440 | < th | dose independent | rect. | 21 | 17 |
| 114 | 29.74 | humidity | 80 | 1440 | < th | dose dependent | sin | 9 | NA |
| 117 | 29.75 | wind | 3 | 1440 | > th | dose independent | rect. | 10 | 1 |
| 118 | 29.75 | wind | 3 | 1440 | < th | dose independent | rect. | 10 | 1 |
| 140 | 29.78 | humidity | 70 | 1440 | > th | dose independent | rect. | 9 | 1 |
| 151 | 29.78 | humidity | 60 | 1440 | < th | dose dependent | rect. | 15 | 21 |
| 165 | 29.81 | humidity | 80 | 1440 | < th | dose dependent | rect. | 6 | 2 |
| 181 | 29.84 | humidity | 90 | 1440 | < th | dose dependent | sin | 6 | NA |
| 206 | 29.87 | humidity | 80 | 1440 | > th | dose independent | rect. | 21 | 17 |
| 240 | 29.91 | humidity | 50 | 1440 | > th | dose dependent | rect. | 3 | 9 |
| 299 | 30.00 | wind | 3 | 1440 | < th | dose independent | rect. | 8 | 3 |
| 306 | 30.01 | humidity | 60 | 1440 | < th | dose independent | sin | 11 | NA |
| 308 | 30.01 | wind | 3 | 1440 | < th | dose independent | rect. | 8 | 1 |
| 331 | 30.04 | wind | 3 | 1440 | > th | dose independent | rect. | 8 | 3 |
| 349 | 30.05 | humidity | 50 | 1440 | > th | dose independent | rect. | 15 | 22 |
| 358 | 30.06 | wind | 3 | 1440 | < th | dose dependent | rect. | 10 | 1 |
| 364 | 30.07 | humidity | 60 | 1440 | > th | dose independent | sin | 11 | NA |
| 374 | 30.07 | humidity | 60 | 1440 | < th | dose dependent | sin | 10 | NA |
| 376 | 30.07 | humidity | 80 | 1440 | < th | dose dependent | rect. | 9 | 1 |
| 400 | 30.10 | wind | 3 | 1440 | < th | dose dependent | rect. | 8 | 3 |
| 432 | 30.13 | humidity | 50 | 1440 | < th | dose independent | rect. | 10 | 7 |
| 472 | 30.15 | atmosphere | 1005 | 10 | > th | dose independent | rect. | 15 | 19 |
| 476 | 30.15 | humidity | 50 | 1440 | > th | dose dependent | sin | 5 | NA |
| 486 | 30.16 | humidity | 50 | 1440 | < th | dose independent | sin | 15 | NA |
| 489 | 30.16 | humidity | 50 | 1440 | > th | dose independent | rect. | 10 | 7 |
| 492 | 30.16 | humidity | 50 | 1440 | > th | dose independent | rect. | 4 | 13 |
| 493 | 30.16 | humidity | 50 | 1440 | > th | dose independent | rect. | 2 | 15 |
| 502 | 30.16 | humidity | 50 | 1440 | > th | dose independent | rect. | 20 | 21 |
| 503 | 30.16 | humidity | 80 | 720 | < th | dose dependent | rect. | 20 | 2 |
| 505 | 30.16 | wind | 3 | 1440 | < th | dose dependent | rect. | 7 | 5 |
| 511 | 30.17 | atmosphere | 1005 | 720 | < th | dose independent | rect. | 19 | 1 |
| 537 | 30.18 | humidity | 50 | 1440 | > th | dose independent | rect. | 13 | 23 |
| 576 | 30.20 | humidity | 50 | 1440 | < th | dose independent | no | NA | NA |
| 578 | 30.20 | humidity | 50 | 1440 | < th | dose independent | rect. | 13 | 4 |
| 649 | 30.20 | humidity | 50 | 1440 | > th | dose independent | rect. | 2 | 19 |
| 677 | 30.20 | humidity | 50 | 1440 | > th | dose independent | rect. | 24 | 21 |
| 724 | 30.20 | humidity | 50 | 1440 | > th | dose dependent | rect. | 9 | 3 |
| 732 | 30.21 | humidity | 50 | 1440 | > th | dose independent | sin | 16 | NA |
| 736 | 30.21 | humidity | 50 | 1440 | > th | dose independent | no | NA | NA |
| 739 | 30.21 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 8 |
| 774 | 30.21 | atmosphere | 1005 | 30 | > th | dose independent | rect. | 18 | 15 |
| 815 | 30.21 | humidity | 50 | 1440 | > th | dose independent | rect. | 4 | 21 |
| 837 | 30.21 | humidity | 50 | 1440 | > th | dose independent | rect. | 4 | 23 |
| 849 | 30.21 | wind | 1 | 14400 | < th | dose dependent | rect. | 12 | 1 |
| 915 | 30.22 | humidity | 50 | 1440 | > th | dose dependent | rect. | 7 | 1 |
| 932 | 30.23 | humidity | 50 | 1440 | > th | dose independent | rect. | 16 | 1 |