BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0875400 Os01g0875400|AK068371
         (350 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0875400  Ubiquitin domain containing protein                 671   0.0  

>Os01g0875400 Ubiquitin domain containing protein
          Length = 350

 Score =  671 bits (1731), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/350 (93%), Positives = 327/350 (93%)

Query: 1   MAEXXXXXXXXVPPLDXXXXXXXXXXXXXXXMTLVAKWKGNDYTVRVVGDDTLGELKRRI 60
           MAE        VPPLD               MTLVAKWKGNDYTVRVVGDDTLGELKRRI
Sbjct: 1   MAEASSSSAAAVPPLDPEAIAAVAEAAPPEEMTLVAKWKGNDYTVRVVGDDTLGELKRRI 60

Query: 61  CEVTGVLPKRQKLLYPKFKLNECKDSELISSIPFKPNVKINMIGTVEDEIFVDQEDDPEI 120
           CEVTGVLPKRQKLLYPKFKLNECKDSELISSIPFKPNVKINMIGTVEDEIFVDQEDDPEI
Sbjct: 61  CEVTGVLPKRQKLLYPKFKLNECKDSELISSIPFKPNVKINMIGTVEDEIFVDQEDDPEI 120

Query: 121 LNDYEIGQNEVTAIKDKDVYKQKLKRRASQYKIKILNPCRKGKKLLVLDIDYTLFDHRSA 180
           LNDYEIGQNEVTAIKDKDVYKQKLKRRASQYKIKILNPCRKGKKLLVLDIDYTLFDHRSA
Sbjct: 121 LNDYEIGQNEVTAIKDKDVYKQKLKRRASQYKIKILNPCRKGKKLLVLDIDYTLFDHRSA 180

Query: 181 AENPIELMRPYLHEFLSAAYSEYDIMIWSATSMKWVGMKMDQLGVLGNPNYKITALMDHL 240
           AENPIELMRPYLHEFLSAAYSEYDIMIWSATSMKWVGMKMDQLGVLGNPNYKITALMDHL
Sbjct: 181 AENPIELMRPYLHEFLSAAYSEYDIMIWSATSMKWVGMKMDQLGVLGNPNYKITALMDHL 240

Query: 241 AMITVQSENLSEKKTFDCKPLGVIWAQFPEYNETNTIMFDDLRRNFVMNPQNGLVIKPYK 300
           AMITVQSENLSEKKTFDCKPLGVIWAQFPEYNETNTIMFDDLRRNFVMNPQNGLVIKPYK
Sbjct: 241 AMITVQSENLSEKKTFDCKPLGVIWAQFPEYNETNTIMFDDLRRNFVMNPQNGLVIKPYK 300

Query: 301 RTHSNRGTDQELVKLTQYLLTIAELEDLSKLDHSAWESFTEENAKRRRHR 350
           RTHSNRGTDQELVKLTQYLLTIAELEDLSKLDHSAWESFTEENAKRRRHR
Sbjct: 301 RTHSNRGTDQELVKLTQYLLTIAELEDLSKLDHSAWESFTEENAKRRRHR 350



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.135    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,855,143
Number of extensions: 422524
Number of successful extensions: 978
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 978
Number of HSP's successfully gapped: 1
Length of query: 350
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 248
Effective length of database: 11,709,973
Effective search space: 2904073304
Effective search space used: 2904073304
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 156 (64.7 bits)