BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0873800 Os01g0873800|AK068140
(1388 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0873800 Conserved hypothetical protein 2718 0.0
>Os01g0873800 Conserved hypothetical protein
Length = 1388
Score = 2718 bits (7046), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1322/1388 (95%), Positives = 1322/1388 (95%)
Query: 1 MDASSELQCVGRLEVAAPPPARYLRVGSLPVPTDXXXXXXXXXXXXXXXXXXRYQMLPLE 60
MDASSELQCVGRLEVAAPPPARYLRVGSLPVPTD RYQMLPLE
Sbjct: 1 MDASSELQCVGRLEVAAPPPARYLRVGSLPVPTDSPASLPALLPSSSPTGAPRYQMLPLE 60
Query: 61 TDLNTLPMIPNIPEKVFPMDAKSTEGSRYGSGLANQNLSRKCEALAVSGLAEYGDEIDVV 120
TDLNTLPMIPNIPEKVFPMDAKSTEGSRYGSGLANQNLSRKCEALAVSGLAEYGDEIDVV
Sbjct: 61 TDLNTLPMIPNIPEKVFPMDAKSTEGSRYGSGLANQNLSRKCEALAVSGLAEYGDEIDVV 120
Query: 121 APTDILKQIFKIPYSKAQVSIAVNRIGDTLILNTGPDVDEGEKIFRRQSNHPKGSDPSMF 180
APTDILKQIFKIPYSKAQVSIAVNRIGDTLILNTGPDVDEGEKIFRRQSNHPKGSDPSMF
Sbjct: 121 APTDILKQIFKIPYSKAQVSIAVNRIGDTLILNTGPDVDEGEKIFRRQSNHPKGSDPSMF 180
Query: 181 LNFAMHSVRAEACDCPPSHQPSKEKQTASAILRGPFGQREGPLDXXXXXXXXXXXYLDQN 240
LNFAMHSVRAEACDCPPSHQPSKEKQTASAILRGPFGQREGPLD YLDQN
Sbjct: 181 LNFAMHSVRAEACDCPPSHQPSKEKQTASAILRGPFGQREGPLDSPSSSSFSTSPYLDQN 240
Query: 241 ISKSRKTSHGARESLYWGARENKQKVKGSDPVKKTTHVGDKPRCDVQESEKSRRVGNNGF 300
ISKSRKTSHGARESLYWGARENKQKVKGSDPVKKTTHVGDKPRCDVQESEKSRRVGNNGF
Sbjct: 241 ISKSRKTSHGARESLYWGARENKQKVKGSDPVKKTTHVGDKPRCDVQESEKSRRVGNNGF 300
Query: 301 RKVCFWQFHNFHMLLGSDLLIFSNEKYMAVSLHLWDVSRQVTPLNWLEAWLDNIMASVPE 360
RKVCFWQFHNFHMLLGSDLLIFSNEKYMAVSLHLWDVSRQVTPLNWLEAWLDNIMASVPE
Sbjct: 301 RKVCFWQFHNFHMLLGSDLLIFSNEKYMAVSLHLWDVSRQVTPLNWLEAWLDNIMASVPE 360
Query: 361 LAICYHQNGVVQGYELLKNDDIFLLKGVSDDGTPAFHPQVVQQNGLAVLRFLQDNCKQDP 420
LAICYHQNGVVQGYELLKNDDIFLLKGVSDDGTPAFHPQVVQQNGLAVLRFLQDNCKQDP
Sbjct: 361 LAICYHQNGVVQGYELLKNDDIFLLKGVSDDGTPAFHPQVVQQNGLAVLRFLQDNCKQDP 420
Query: 421 GAYWLYKGAEEDVIQLYDLSILPQNHTAGDHRSTCGPMSSLMKKGRKESLFSLGTLLYRV 480
GAYWLYKGAEEDVIQLYDLSILPQNHTAGDHRSTCGPMSSLMKKGRKESLFSLGTLLYRV
Sbjct: 421 GAYWLYKGAEEDVIQLYDLSILPQNHTAGDHRSTCGPMSSLMKKGRKESLFSLGTLLYRV 480
Query: 481 AHRMSLSKVPSNRAKCAKFFKKCLDFLSEQDHLVVRAYAHEQFARLILRCYXXXXXXXXX 540
AHRMSLSKVPSNRAKCAKFFKKCLDFLSEQDHLVVRAYAHEQFARLILRCY
Sbjct: 481 AHRMSLSKVPSNRAKCAKFFKKCLDFLSEQDHLVVRAYAHEQFARLILRCYEELELTSES 540
Query: 541 XXXXXXXXXXDLDESPDLSLENLPSKQNEVLTEISEEPATLDGMLECSRSGSSQASNSLV 600
DLDESPDLSLENLPSKQNEVLTEISEEPATLDGMLECSRSGSSQASNSLV
Sbjct: 541 FLLESEVTLTDLDESPDLSLENLPSKQNEVLTEISEEPATLDGMLECSRSGSSQASNSLV 600
Query: 601 DPGHVDISPVSSATKGDVTVDSLVMCQSGTQVSRTIADAISSKLAAIHHVSQAIKSLRWN 660
DPGHVDISPVSSATKGDVTVDSLVMCQSGTQVSRTIADAISSKLAAIHHVSQAIKSLRWN
Sbjct: 601 DPGHVDISPVSSATKGDVTVDSLVMCQSGTQVSRTIADAISSKLAAIHHVSQAIKSLRWN 660
Query: 661 RQLQNTQDDCVGNADTIWEKPVDFSLCRCGDIDCIEVCDIREWLPKSKMDHKLWKLVLLL 720
RQLQNTQDDCVGNADTIWEKPVDFSLCRCGDIDCIEVCDIREWLPKSKMDHKLWKLVLLL
Sbjct: 661 RQLQNTQDDCVGNADTIWEKPVDFSLCRCGDIDCIEVCDIREWLPKSKMDHKLWKLVLLL 720
Query: 721 GESYLALGEAYKNDGQLRRTLKVVELACLVYGSMPKNLEGEQFISSMSNSSLSVEDGDLK 780
GESYLALGEAYKNDGQLRRTLKVVELACLVYGSMPKNLEGEQFISSMSNSSLSVEDGDLK
Sbjct: 721 GESYLALGEAYKNDGQLRRTLKVVELACLVYGSMPKNLEGEQFISSMSNSSLSVEDGDLK 780
Query: 781 ANLVLDEADYFKNAKCFNYDVSAGQLPPNYLFWVKAWMLVGDVYAEYHRLRGQQAPVLPE 840
ANLVLDEADYFKNAKCFNYDVSAGQLPPNYLFWVKAWMLVGDVYAEYHRLRGQQAPVLPE
Sbjct: 781 ANLVLDEADYFKNAKCFNYDVSAGQLPPNYLFWVKAWMLVGDVYAEYHRLRGQQAPVLPE 840
Query: 841 QKPDGEVRMSNEVAMEVKRLKRKLGKDKQNCGTCSLINCSCQXXXXXXXXXXXXXXXXXX 900
QKPDGEVRMSNEVAMEVKRLKRKLGKDKQNCGTCSLINCSCQ
Sbjct: 841 QKPDGEVRMSNEVAMEVKRLKRKLGKDKQNCGTCSLINCSCQSDRANSGSSASSSSSEAS 900
Query: 901 TLYGRKKNKKSSGRNFHSQSRETKENPSTQDSMGDSEKRSVSNVEIDTNNYTMENQSRNN 960
TLYGRKKNKKSSGRNFHSQSRETKENPSTQDSMGDSEKRSVSNVEIDTNNYTMENQSRNN
Sbjct: 901 TLYGRKKNKKSSGRNFHSQSRETKENPSTQDSMGDSEKRSVSNVEIDTNNYTMENQSRNN 960
Query: 961 DGDPDKSKEDVSSVRVGGIFKFLGGPEPGDVEYNLHSAIHCYDAAKGVIFAFPVPLAEKS 1020
DGDPDKSKEDVSSVRVGGIFKFLGGPEPGDVEYNLHSAIHCYDAAKGVIFAFPVPLAEKS
Sbjct: 961 DGDPDKSKEDVSSVRVGGIFKFLGGPEPGDVEYNLHSAIHCYDAAKGVIFAFPVPLAEKS 1020
Query: 1021 TILKKRGWAFNELGCHRLESRNLGNAEIAFADAIKAFQEVADHTNVILINCNLGHGRRAL 1080
TILKKRGWAFNELGCHRLESRNLGNAEIAFADAIKAFQEVADHTNVILINCNLGHGRRAL
Sbjct: 1021 TILKKRGWAFNELGCHRLESRNLGNAEIAFADAIKAFQEVADHTNVILINCNLGHGRRAL 1080
Query: 1081 AEQFVSRIDEFQKYDFPQDAYMQSFKSAKSEYFQAINYYTAAKRQLTYADNEVDKVLYNE 1140
AEQFVSRIDEFQKYDFPQDAYMQSFKSAKSEYFQAINYYTAAKRQLTYADNEVDKVLYNE
Sbjct: 1081 AEQFVSRIDEFQKYDFPQDAYMQSFKSAKSEYFQAINYYTAAKRQLTYADNEVDKVLYNE 1140
Query: 1141 VYTQYAHTHLRLGMLLARESFLTDSYEGGFVDESSNRTVLEISASDAFREALSTYESLGE 1200
VYTQYAHTHLRLGMLLARESFLTDSYEGGFVDESSNRTVLEISASDAFREALSTYESLGE
Sbjct: 1141 VYTQYAHTHLRLGMLLARESFLTDSYEGGFVDESSNRTVLEISASDAFREALSTYESLGE 1200
Query: 1201 HRKQEAAFGHFQLACYQRDLCLRFLDLIDKEVKQKNEDKYRQKAKWYGSLAEKNWQRALE 1260
HRKQEAAFGHFQLACYQRDLCLRFLDLIDKEVKQKNEDKYRQKAKWYGSLAEKNWQRALE
Sbjct: 1201 HRKQEAAFGHFQLACYQRDLCLRFLDLIDKEVKQKNEDKYRQKAKWYGSLAEKNWQRALE 1260
Query: 1261 FYGPKTHSTMFLNILMAQSALSVNLSDSFHSSVMLENALVHLLDGRHVVEANDEYSNDLD 1320
FYGPKTHSTMFLNILMAQSALSVNLSDSFHSSVMLENALVHLLDGRHVVEANDEYSNDLD
Sbjct: 1261 FYGPKTHSTMFLNILMAQSALSVNLSDSFHSSVMLENALVHLLDGRHVVEANDEYSNDLD 1320
Query: 1321 LDIKPKFWSQLQRLLKSMLAAARPAASVGQANASNSRGDTAKLKEMYRLSLKSTSLGQLH 1380
LDIKPKFWSQLQRLLKSMLAAARPAASVGQANASNSRGDTAKLKEMYRLSLKSTSLGQLH
Sbjct: 1321 LDIKPKFWSQLQRLLKSMLAAARPAASVGQANASNSRGDTAKLKEMYRLSLKSTSLGQLH 1380
Query: 1381 ALHKIWVS 1388
ALHKIWVS
Sbjct: 1381 ALHKIWVS 1388
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.132 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 45,005,052
Number of extensions: 1834947
Number of successful extensions: 4389
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 4386
Number of HSP's successfully gapped: 1
Length of query: 1388
Length of database: 17,035,801
Length adjustment: 113
Effective length of query: 1275
Effective length of database: 11,135,619
Effective search space: 14197914225
Effective search space used: 14197914225
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 162 (67.0 bits)