BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0861900 Os01g0861900|AK105529
         (490 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0861900  Conserved hypothetical protein                      717   0.0  

>Os01g0861900 Conserved hypothetical protein
          Length = 490

 Score =  717 bits (1850), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/464 (77%), Positives = 361/464 (77%)

Query: 27  MEYGWYRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXILDAHPVLRARLRGSASGS 86
           MEYGWYR                                  ILDAHPVLRARLRGSASGS
Sbjct: 27  MEYGWYRAVPGGTGTTLLALRLARGAEAAVAAATVQAALRAILDAHPVLRARLRGSASGS 86

Query: 87  XXXXXXXXXXXXXXXXXXXXXXXXESATDFPSLLEHELNRNPWXXXXXXXXXSEHEPDAP 146
                                   ESATDFPSLLEHELNRNPW         SEHEPDAP
Sbjct: 87  PTLAFPSAAAPPPPPLALELLPVPESATDFPSLLEHELNRNPWTAAAATATASEHEPDAP 146

Query: 147 PVLFATLYELPPPAGGGSALFVRIHTAACDRAASASLVRXXXXXXXXXXXXXXXXXXXXX 206
           PVLFATLYELPPPAGGGSALFVRIHTAACDRAASASLVR                     
Sbjct: 147 PVLFATLYELPPPAGGGSALFVRIHTAACDRAASASLVRELLAQLAGDGAAAAAASEPED 206

Query: 207 XXVRASLEERIPQRDSWKPFWARGLDMVGYSINGLRTSTLPFEVTGTERSTQMLRLGFDR 266
             VRASLEERIPQRDSWKPFWARGLDMVGYSINGLRTSTLPFEVTGTERSTQMLRLGFDR
Sbjct: 207 AAVRASLEERIPQRDSWKPFWARGLDMVGYSINGLRTSTLPFEVTGTERSTQMLRLGFDR 266

Query: 267 DETTRLLDACKQNGVKXXXXXXXXXXXXXRQSKLQLASNQQETYSIATLINCRKFLEPAL 326
           DETTRLLDACKQNGVK             RQSKLQLASNQQETYSIATLINCRKFLEPAL
Sbjct: 267 DETTRLLDACKQNGVKLCAAMAAATLLAARQSKLQLASNQQETYSIATLINCRKFLEPAL 326

Query: 327 DDHNVGFYHSAITNTHAIHGGEELWELAKRCQDSYTNAKNNKKHLTDIADLNFLMCRAIE 386
           DDHNVGFYHSAITNTHAIHGGEELWELAKRCQDSYTNAKNNKKHLTDIADLNFLMCRAIE
Sbjct: 327 DDHNVGFYHSAITNTHAIHGGEELWELAKRCQDSYTNAKNNKKHLTDIADLNFLMCRAIE 386

Query: 387 NPQLTTGSALRTAVVSVFEEPVVYDLSDLQSKAGVEEFVCCATVHGVGPSIGLFDSIRDG 446
           NPQLTTGSALRTAVVSVFEEPVVYDLSDLQSKAGVEEFVCCATVHGVGPSIGLFDSIRDG
Sbjct: 387 NPQLTTGSALRTAVVSVFEEPVVYDLSDLQSKAGVEEFVCCATVHGVGPSIGLFDSIRDG 446

Query: 447 QLEFACMYPCPLHSRKQMQEILNKVKQILHEGSIGDDESFEDCT 490
           QLEFACMYPCPLHSRKQMQEILNKVKQILHEGSIGDDESFEDCT
Sbjct: 447 QLEFACMYPCPLHSRKQMQEILNKVKQILHEGSIGDDESFEDCT 490



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.134    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,596,940
Number of extensions: 435082
Number of successful extensions: 1054
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1051
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 385
Effective length of database: 11,553,331
Effective search space: 4448032435
Effective search space used: 4448032435
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 158 (65.5 bits)