BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0855600 Os01g0855600|AK099776
         (474 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0855600  Similar to Hs1pro-1 protein                         858   0.0  
AK060734                                                          395   e-110

>Os01g0855600 Similar to Hs1pro-1 protein
          Length = 474

 Score =  858 bits (2217), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/474 (90%), Positives = 430/474 (90%)

Query: 1   MATPKLSPVSPVRPEDKQRAXXXXXXGAVAAPLRVQDDTAVEEYEQYLRLPELARLWKDR 60
           MATPKLSPVSPVRPEDKQRA      GAVAAPLRVQDDTAVEEYEQYLRLPELARLWKDR
Sbjct: 1   MATPKLSPVSPVRPEDKQRASSSSSSGAVAAPLRVQDDTAVEEYEQYLRLPELARLWKDR 60

Query: 61  CCPEWADEGLVKPALQALEITFRFISVALSDPRGYASXXXXXXXXXXXXXXXXXXXXXXC 120
           CCPEWADEGLVKPALQALEITFRFISVALSDPRGYAS                      C
Sbjct: 61  CCPEWADEGLVKPALQALEITFRFISVALSDPRGYASRRELARRLEALAAREVELVAALC 120

Query: 121 EGEQCPPLAELSASKGVLPRERSASEVWKIPGSAAAVVCQVSEASLLPRLAAWDKSETVA 180
           EGEQCPPLAELSASKGVLPRERSASEVWKIPGSAAAVVCQVSEASLLPRLAAWDKSETVA
Sbjct: 121 EGEQCPPLAELSASKGVLPRERSASEVWKIPGSAAAVVCQVSEASLLPRLAAWDKSETVA 180

Query: 181 ARIKYAIESQMQGCVFTLGLGEPNLAGKPVLEYDRVVRPHELHALKAKIAPEPKTGYRNK 240
           ARIKYAIESQMQGCVFTLGLGEPNLAGKPVLEYDRVVRPHELHALKAKIAPEPKTGYRNK
Sbjct: 181 ARIKYAIESQMQGCVFTLGLGEPNLAGKPVLEYDRVVRPHELHALKAKIAPEPKTGYRNK 240

Query: 241 ENEALFTIHQILESWLCAASQLLTRLNNRIEARNWEAAASDCWILERVWKLLADVEDLHL 300
           ENEALFTIHQILESWLCAASQLLTRLNNRIEARNWEAAASDCWILERVWKLLADVEDLHL
Sbjct: 241 ENEALFTIHQILESWLCAASQLLTRLNNRIEARNWEAAASDCWILERVWKLLADVEDLHL 300

Query: 301 LMDPDDFLRLKSQLAIRAAPGSDASSCFRSRALLHVANATRDLKKRVPCVLGVEVDPNGG 360
           LMDPDDFLRLKSQLAIRAAPGSDASSCFRSRALLHVANATRDLKKRVPCVLGVEVDPNGG
Sbjct: 301 LMDPDDFLRLKSQLAIRAAPGSDASSCFRSRALLHVANATRDLKKRVPCVLGVEVDPNGG 360

Query: 361 PRVQEAAMRLFHSRRRGEGEEAGKVELLXXXXXXXXXXXXXXXXYRQLVAAVMGTAESST 420
           PRVQEAAMRLFHSRRRGEGEEAGKVELL                YRQLVAAVMGTAESST
Sbjct: 361 PRVQEAAMRLFHSRRRGEGEEAGKVELLQAFQAVEAAVRRFFFAYRQLVAAVMGTAESST 420

Query: 421 NRALFSPAEEMDPLAQMFLEPPYFPSLDAAKTFLADYWVRRMAGDGDSASSRRS 474
           NRALFSPAEEMDPLAQMFLEPPYFPSLDAAKTFLADYWVRRMAGDGDSASSRRS
Sbjct: 421 NRALFSPAEEMDPLAQMFLEPPYFPSLDAAKTFLADYWVRRMAGDGDSASSRRS 474



>AK060734 
          Length = 407

 Score =  395 bits (1016), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 195/213 (91%), Positives = 196/213 (92%)

Query: 262 LLTRLNNRIEARNWEAAASDCWILERVWKLLADVEDLHLLMDPDDFLRLKSQLAIRAAPG 321
           + TRLNNRIEARNWEAAASDCWILERVWKLLADVEDLHLLMDPDDFLRLKSQLAIRAAPG
Sbjct: 195 VFTRLNNRIEARNWEAAASDCWILERVWKLLADVEDLHLLMDPDDFLRLKSQLAIRAAPG 254

Query: 322 SDASSCFRSRALLHVANATRDLKKRVPCVLGVEVDPNGGPRVQEAAMRLFHSRRRGEGEE 381
           SDASSCFRSRALLHVANATRDLKKRVPCVLGVEVDPNGGPRVQEAAMRLFHSRRRGEGEE
Sbjct: 255 SDASSCFRSRALLHVANATRDLKKRVPCVLGVEVDPNGGPRVQEAAMRLFHSRRRGEGEE 314

Query: 382 AGKVELLXXXXXXXXXXXXXXXXYRQLVAAVMGTAESSTNRALFSPAEEMDPLAQMFLEP 441
           AGKVELL                YRQLVAAVMGTAESSTNRALFSPAEEMDPLAQMFLEP
Sbjct: 315 AGKVELLQAFQAVEAAVRRFFFAYRQLVAAVMGTAESSTNRALFSPAEEMDPLAQMFLEP 374

Query: 442 PYFPSLDAAKTFLADYWVRRMAGDGDSASSRRS 474
           PYFPSLDAAKTFLADYWVRRMAGDGDSASSRRS
Sbjct: 375 PYFPSLDAAKTFLADYWVRRMAGDGDSASSRRS 407




 Score =  332 bits (852), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 169/197 (85%), Positives = 169/197 (85%)

Query: 1   MATPKLSPVSPVRPEDKQRAXXXXXXGAVAAPLRVQDDTAVEEYEQYLRLPELARLWKDR 60
           MATPKLSPVSPVRPEDKQRA      GAVAAPLRVQDDTAVEEYEQYLRLPELARLWKDR
Sbjct: 1   MATPKLSPVSPVRPEDKQRASSSSSSGAVAAPLRVQDDTAVEEYEQYLRLPELARLWKDR 60

Query: 61  CCPEWADEGLVKPALQALEITFRFISVALSDPRGYASXXXXXXXXXXXXXXXXXXXXXXC 120
           CCPEWADEGLVKPALQALEITFRFISVALSDPRGYAS                      C
Sbjct: 61  CCPEWADEGLVKPALQALEITFRFISVALSDPRGYASRRELARRLEALAAREVELVAALC 120

Query: 121 EGEQCPPLAELSASKGVLPRERSASEVWKIPGSAAAVVCQVSEASLLPRLAAWDKSETVA 180
           EGEQCPPLAELSASKGVLPRERSASEVWKIPGSAAAVVCQVSEASLLPRLAAWDKSETVA
Sbjct: 121 EGEQCPPLAELSASKGVLPRERSASEVWKIPGSAAAVVCQVSEASLLPRLAAWDKSETVA 180

Query: 181 ARIKYAIESQMQGCVFT 197
           ARIKYAIESQMQGCVFT
Sbjct: 181 ARIKYAIESQMQGCVFT 197



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.132    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 15,404,515
Number of extensions: 590796
Number of successful extensions: 1370
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1366
Number of HSP's successfully gapped: 3
Length of query: 474
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 369
Effective length of database: 11,553,331
Effective search space: 4263179139
Effective search space used: 4263179139
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 158 (65.5 bits)