Os01g0855600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Hs1pro-1 protein.
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Os01g0855600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Hs1pro-1 protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 386.78 | 0.924 | 7.75 | 0.0295 | 1.17 | 5.54 | -3.09 | 3.25 | 0.719 | 4.11 | 0.81 | 748 | 8.98 | 9.88 |
| 395.48 | 0.926 | 7.72 | 0.197 | 1.21 | 5.24 | -2.43 | -- | 0.75 | 4.31 | 0.82 | 752 | 8.97 | 9.93 |
| 401.6 | 0.933 | 7.72 | 0.158 | 1.62 | 5.27 | -- | 3.45 | 0.808 | 2.68 | 0.7202 | 767 | 8.85 | 9.55 |
| 399.27 | 0.931 | 7.69 | 0.363 | 1.68 | 4.77 | -- | -- | 0.917 | 2.52 | 0.82 | 834 | 8.77 | 9.62 |
| 431.06 | 0.967 | 7.74 | 0.184 | -- | 5.71 | -- | 2.55 | 0.691 | -- | 0.8199 | 829 | 9.79 | 9.87 |
| 543.34 | 1.09 | 7.81 | -0.419 | 2.28 | -- | -1.31 | -- | 0.446 | 1.84 | -- | -- | -- | -- |
| 549.83 | 1.1 | 7.81 | -0.377 | 2.28 | -- | -- | -- | 0.454 | 1.75 | -- | -- | -- | -- |
| 423.52 | 0.958 | 7.72 | 0.239 | -- | 5.38 | -- | -- | 0.758 | -- | 0.82 | 822 | 10 | 9.75 |
| 397.29 | 0.928 | 7.73 | -- | 1.71 | 4.2 | -- | -- | 0.725 | 2.47 | 0.83 | 841 | 8.75 | 9.68 |
| 865.8 | 1.37 | 7.78 | -0.284 | -- | -- | -- | -- | 0.506 | -- | -- | -- | -- | -- |
| 553.58 | 1.1 | 7.8 | -- | 2.27 | -- | -- | -- | 0.496 | 1.74 | -- | -- | -- | -- |
| 423.03 | 0.958 | 7.75 | -- | -- | 5.22 | -- | -- | 0.68 | -- | 0.8282 | 826 | 10.6 | 9.15 |
| 867.94 | 1.38 | 7.78 | -- | -- | -- | -- | -- | 0.537 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 395.85 | radiation | 1 | 720 | < th | dose dependent | rect. | 9 | 10 |
| 2 | 396.05 | radiation | 1 | 720 | < th | dose dependent | rect. | 7 | 12 |
| 7 | 397.96 | radiation | 1 | 720 | < th | dose independent | rect. | 9 | 10 |
| 16 | 402.72 | radiation | 1 | 720 | < th | dose independent | rect. | 9 | 17 |
| 19 | 403.48 | radiation | 1 | 720 | > th | dose independent | rect. | 10 | 9 |
| 31 | 404.03 | radiation | 1 | 720 | < th | dose dependent | rect. | 9 | 17 |
| 64 | 410.10 | radiation | 1 | 720 | < th | dose independent | sin | 18 | NA |
| 73 | 411.04 | radiation | 1 | 720 | < th | dose dependent | sin | 19 | NA |
| 105 | 412.28 | radiation | 1 | 720 | < th | dose independent | sin | 22 | NA |
| 117 | 413.13 | radiation | 1 | 720 | > th | dose independent | sin | 19 | NA |
| 164 | 417.93 | temperature | 25 | 720 | > th | dose dependent | rect. | 13 | 12 |
| 165 | 417.95 | temperature | 25 | 720 | > th | dose dependent | sin | 15 | NA |
| 207 | 421.55 | temperature | 25 | 720 | > th | dose independent | rect. | 11 | 13 |
| 263 | 425.98 | humidity | 70 | 720 | > th | dose independent | rect. | 14 | 14 |
| 264 | 426.07 | temperature | 25 | 720 | > th | dose independent | sin | 19 | NA |
| 279 | 427.35 | humidity | 60 | 720 | > th | dose dependent | rect. | 15 | 5 |
| 307 | 428.49 | humidity | 50 | 720 | > th | dose dependent | sin | 18 | NA |
| 311 | 428.69 | humidity | 60 | 720 | > th | dose dependent | rect. | 12 | 8 |
| 314 | 428.80 | humidity | 70 | 720 | > th | dose independent | sin | 14 | NA |
| 348 | 429.56 | humidity | 70 | 720 | > th | dose independent | rect. | 14 | 6 |
| 377 | 430.41 | humidity | 50 | 720 | > th | dose dependent | rect. | 11 | 13 |
| 382 | 430.53 | humidity | 50 | 720 | > th | dose dependent | rect. | 9 | 15 |
| 383 | 430.54 | humidity | 80 | 720 | > th | dose independent | rect. | 11 | 9 |
| 384 | 430.58 | radiation | 1 | 720 | > th | dose independent | rect. | 13 | 6 |
| 400 | 430.99 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 408 | 431.27 | radiation | 1 | 720 | > th | dose independent | rect. | 13 | 17 |
| 420 | 431.69 | humidity | 70 | 720 | > th | dose independent | rect. | 14 | 19 |
| 469 | 433.35 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 485 | 433.68 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 9 |
| 491 | 433.73 | humidity | 70 | 720 | > th | dose independent | rect. | 14 | 10 |
| 495 | 433.78 | radiation | 1 | 720 | < th | dose independent | rect. | 21 | 22 |
| 565 | 435.20 | temperature | 25 | 720 | < th | dose independent | rect. | 11 | 16 |
| 568 | 435.27 | radiation | 1 | 720 | < th | dose dependent | rect. | 21 | 22 |
| 611 | 435.86 | temperature | 25 | 720 | < th | dose independent | rect. | 9 | 19 |
| 615 | 435.88 | temperature | 25 | 720 | < th | dose independent | sin | 17 | NA |
| 688 | 437.26 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 9 |
| 733 | 438.02 | humidity | 90 | 720 | < th | dose dependent | rect. | 11 | 12 |
| 772 | 438.52 | humidity | 70 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 816 | 439.26 | humidity | 80 | 720 | < th | dose independent | rect. | 11 | 9 |
| 934 | 440.86 | humidity | 90 | 720 | < th | dose dependent | rect. | 13 | 9 |
| 997 | 441.75 | humidity | 50 | 1440 | > th | dose dependent | rect. | 11 | 3 |