BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0833700 Os01g0833700|Z67962
(518 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0833700 Clathrin adaptor complex, medium chain family ... 962 0.0
Os05g0311000 Clathrin adaptor complex, medium chain family ... 823 0.0
Os05g0310800 Similar to Coatomer delta subunit (Delta-coat ... 819 0.0
Os08g0368000 Similar to Coatomer delta subunit (Delta-coat ... 262 5e-70
>Os01g0833700 Clathrin adaptor complex, medium chain family protein
Length = 518
Score = 962 bits (2486), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 476/518 (91%), Positives = 476/518 (91%)
Query: 1 MVVLAASIISKSGKALVSRQFVDMSRIRIDGLLAAFPKLVGSGKQHTYVETENVRYVYQP 60
MVVLAASIISKSGKALVSRQFVDMSRIRIDGLLAAFPKLVGSGKQHTYVETENVRYVYQP
Sbjct: 1 MVVLAASIISKSGKALVSRQFVDMSRIRIDGLLAAFPKLVGSGKQHTYVETENVRYVYQP 60
Query: 61 IEALYLLLITNKQSNILEDLDTLRLLSKLIPEYAPSLDEEGVCKXXXXXXXXXXXXXSLG 120
IEALYLLLITNKQSNILEDLDTLRLLSKLIPEYAPSLDEEGVCK SLG
Sbjct: 61 IEALYLLLITNKQSNILEDLDTLRLLSKLIPEYAPSLDEEGVCKAAFELLFAFIEAISLG 120
Query: 121 NKENVTVAQVKQYCEMESHEEKLHKLVMQSKINETKDVMRRKVTEIEKSKTDRGKPDKGG 180
NKENVTVAQVKQYCEMESHEEKLHKLVMQSKINETKDVMRRKVTEIEKSKTDRGKPDKGG
Sbjct: 121 NKENVTVAQVKQYCEMESHEEKLHKLVMQSKINETKDVMRRKVTEIEKSKTDRGKPDKGG 180
Query: 181 FGSLRTPNSFSXXXXXXXXXXXXXXXXXXXSFTHKAKGRXXXXXXXXXXTKVPGGMKLSK 240
FGSLRTPNSFS SFTHKAKGR TKVPGGMKLSK
Sbjct: 181 FGSLRTPNSFSDMGIRGGGPGGDPIFGDMDSFTHKAKGRPSAPAPASASTKVPGGMKLSK 240
Query: 241 AQKTNQFLESLKAEGEVILEDTQPSATQSRSSYIPPSDPITVTIEEKLNVTVKRDGGVSN 300
AQKTNQFLESLKAEGEVILEDTQPSATQSRSSYIPPSDPITVTIEEKLNVTVKRDGGVSN
Sbjct: 241 AQKTNQFLESLKAEGEVILEDTQPSATQSRSSYIPPSDPITVTIEEKLNVTVKRDGGVSN 300
Query: 301 FDIQGTLALQILNDTDGFIQLQIENQDVPGLNFKTHPNINKELFNSQQIVGAKDPNRPFP 360
FDIQGTLALQILNDTDGFIQLQIENQDVPGLNFKTHPNINKELFNSQQIVGAKDPNRPFP
Sbjct: 301 FDIQGTLALQILNDTDGFIQLQIENQDVPGLNFKTHPNINKELFNSQQIVGAKDPNRPFP 360
Query: 361 SGQNETPLVKWRIQELNESSLPLAVNCWPSVSGNETYVNIEYEASEMFDLHNVVISIPLP 420
SGQNETPLVKWRIQELNESSLPLAVNCWPSVSGNETYVNIEYEASEMFDLHNVVISIPLP
Sbjct: 361 SGQNETPLVKWRIQELNESSLPLAVNCWPSVSGNETYVNIEYEASEMFDLHNVVISIPLP 420
Query: 421 ALREAPGVRQIDGEWRYDSRNSVLEWSIILVDQSNRSGSLEFTVPAADPSTFFPISVGFS 480
ALREAPGVRQIDGEWRYDSRNSVLEWSIILVDQSNRSGSLEFTVPAADPSTFFPISVGFS
Sbjct: 421 ALREAPGVRQIDGEWRYDSRNSVLEWSIILVDQSNRSGSLEFTVPAADPSTFFPISVGFS 480
Query: 481 ASNTFSDLKVTAIRPLREGSPPKFSQRNRLVTYNYQVV 518
ASNTFSDLKVTAIRPLREGSPPKFSQRNRLVTYNYQVV
Sbjct: 481 ASNTFSDLKVTAIRPLREGSPPKFSQRNRLVTYNYQVV 518
>Os05g0311000 Clathrin adaptor complex, medium chain family protein
Length = 523
Score = 823 bits (2127), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 405/529 (76%), Positives = 443/529 (83%), Gaps = 17/529 (3%)
Query: 1 MVVLAASIISKSGKALVSRQFVDMSRIRIDGLLAAFPKLVGSGKQHTYVETENVRYVYQP 60
MVVLAASIISKSGKALVSRQFVDMSRIRI+GLLAAFPKLVG+GKQHTYVETENVRYVYQP
Sbjct: 1 MVVLAASIISKSGKALVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVETENVRYVYQP 60
Query: 61 IEALYLLLITNKQSNILEDLDTLRLLSKLIPEYAPSLDEEGVCKXXXXXXXXXXXXXSLG 120
IE LYLLLITNKQSNILEDLDTLRLLSKL+PEY+PSLDEEGVCK LG
Sbjct: 61 IEGLYLLLITNKQSNILEDLDTLRLLSKLVPEYSPSLDEEGVCKTAFELIFAFDEAICLG 120
Query: 121 NKENVTVAQVKQYCEMESHEEKLHKLVMQSKINETKDVMRRKVTEIEKSKTDRGKPDKGG 180
NKENVTV QVKQYCEMESHEEK HKL+MQSKINET+DVM++K +E++K K +RGK DKGG
Sbjct: 121 NKENVTVQQVKQYCEMESHEEKAHKLMMQSKINETRDVMKKKASELDKMKMERGKLDKGG 180
Query: 181 FGSLRTP----NSFSXXXXXXXXXXXXXXX----XXXXSFTHKAKGRXXXXXXXXXXTKV 232
+ ++ P +F SF K KGR
Sbjct: 181 YSAISGPRVVEKAFGDMSITGSGFGSGSGLGGLSMDMDSFASKPKGRPSAA------ATA 234
Query: 233 PG---GMKLSKAQKTNQFLESLKAEGEVILEDTQPSATQSRSSYIPPSDPITVTIEEKLN 289
PG GMKL K QKTNQFLESLKAEGEVILED QPS+ QSR S +PPSDP+TVTIEEKLN
Sbjct: 235 PGKGLGMKLGKTQKTNQFLESLKAEGEVILEDVQPSSVQSRVSPLPPSDPVTVTIEEKLN 294
Query: 290 VTVKRDGGVSNFDIQGTLALQILNDTDGFIQLQIENQDVPGLNFKTHPNINKELFNSQQI 349
VTVKRDGGV+NFD+QGTLALQ+LNDTDGFIQLQIENQDVPGL+FKTHPNINK+LFNSQQ+
Sbjct: 295 VTVKRDGGVNNFDVQGTLALQVLNDTDGFIQLQIENQDVPGLSFKTHPNINKDLFNSQQV 354
Query: 350 VGAKDPNRPFPSGQNETPLVKWRIQELNESSLPLAVNCWPSVSGNETYVNIEYEASEMFD 409
VGAKDPNRPFPSGQNETPLVKWRI ++ESSLPL+VNCWPSVSGNETYVNIEYEA+EMFD
Sbjct: 355 VGAKDPNRPFPSGQNETPLVKWRIHGMDESSLPLSVNCWPSVSGNETYVNIEYEAAEMFD 414
Query: 410 LHNVVISIPLPALREAPGVRQIDGEWRYDSRNSVLEWSIILVDQSNRSGSLEFTVPAADP 469
LHNVVISIPLPALREAP VRQIDGEWRYDSRNSVLEWSI+L+DQSNRSGS+EF VP ADP
Sbjct: 415 LHNVVISIPLPALREAPSVRQIDGEWRYDSRNSVLEWSILLIDQSNRSGSMEFVVPPADP 474
Query: 470 STFFPISVGFSASNTFSDLKVTAIRPLREGSPPKFSQRNRLVTYNYQVV 518
STFFPIS+GFSAS+TFSDLKVT IRPL++G+PPK+SQR RLVT NYQVV
Sbjct: 475 STFFPISIGFSASSTFSDLKVTGIRPLKDGNPPKYSQRARLVTANYQVV 523
>Os05g0310800 Similar to Coatomer delta subunit (Delta-coat protein) (Delta-COP)
Length = 524
Score = 819 bits (2115), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 403/529 (76%), Positives = 443/529 (83%), Gaps = 16/529 (3%)
Query: 1 MVVLAASIISKSGKALVSRQFVDMSRIRIDGLLAAFPKLVGSGKQHTYVETENVRYVYQP 60
MVVLAASIISKSGKALVSRQFVDMSRIRI+GLLAAFPKLVG+GKQHTYVETENVRYVYQP
Sbjct: 1 MVVLAASIISKSGKALVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVETENVRYVYQP 60
Query: 61 IEALYLLLITNKQSNILEDLDTLRLLSKLIPEYAPSLDEEGVCKXXXXXXXXXXXXXSLG 120
IE LYLLLITNKQSNILEDLDTLRLLSKL+PEY+PSLDEEGVCK SLG
Sbjct: 61 IEGLYLLLITNKQSNILEDLDTLRLLSKLVPEYSPSLDEEGVCKTAFELIFAFDEAISLG 120
Query: 121 NKENVTVAQVKQYCEMESHEEKLHKLVMQSKINETKDVMRRKVTEIEKSKTDRGKPDKGG 180
NKENVTV QVKQYCEMESHEEK HKL+MQSKINET+DVM++K +E++K + +RGK DKGG
Sbjct: 121 NKENVTVQQVKQYCEMESHEEKAHKLMMQSKINETRDVMKKKASELDKMRMERGKLDKGG 180
Query: 181 FGSLRTP-------NSFS-XXXXXXXXXXXXXXXXXXXSFTHKAKGRXXXXXXXXXXTKV 232
+ S+ P N S SF K KG
Sbjct: 181 YSSISGPRVIEKTFNDMSITGSGFGSGSGLGGLGMDMDSFASKPKG-----GRPSAAATA 235
Query: 233 PG---GMKLSKAQKTNQFLESLKAEGEVILEDTQPSATQSRSSYIPPSDPITVTIEEKLN 289
PG GMKL K QKTNQFLESLKAEGEVILED QPS+ QSR+S +PPSDP+TVTIEEKLN
Sbjct: 236 PGKGLGMKLGKTQKTNQFLESLKAEGEVILEDVQPSSVQSRASPLPPSDPVTVTIEEKLN 295
Query: 290 VTVKRDGGVSNFDIQGTLALQILNDTDGFIQLQIENQDVPGLNFKTHPNINKELFNSQQI 349
VTVKRDGGV+NFD+QGTLALQ+LND DGFIQLQIENQDVPGL+FKTHPNINK+LFNSQQ+
Sbjct: 296 VTVKRDGGVNNFDVQGTLALQVLNDADGFIQLQIENQDVPGLSFKTHPNINKDLFNSQQV 355
Query: 350 VGAKDPNRPFPSGQNETPLVKWRIQELNESSLPLAVNCWPSVSGNETYVNIEYEASEMFD 409
VGAKDPNRPFPSGQNETPLVKWRIQ ++ESSLPL+VNCWPSVSG+ETYVNIEYEA+EMFD
Sbjct: 356 VGAKDPNRPFPSGQNETPLVKWRIQGMDESSLPLSVNCWPSVSGSETYVNIEYEAAEMFD 415
Query: 410 LHNVVISIPLPALREAPGVRQIDGEWRYDSRNSVLEWSIILVDQSNRSGSLEFTVPAADP 469
LHNVVISIPLPALREAP VRQIDGEW+YDSRNSVLEWSI+L+DQSNRSGS+EF VP ADP
Sbjct: 416 LHNVVISIPLPALREAPSVRQIDGEWKYDSRNSVLEWSILLIDQSNRSGSMEFVVPPADP 475
Query: 470 STFFPISVGFSASNTFSDLKVTAIRPLREGSPPKFSQRNRLVTYNYQVV 518
STFFPIS+GFSAS+TFSDLKVT IRPL++G+PPK+SQR RLV NYQVV
Sbjct: 476 STFFPISIGFSASSTFSDLKVTGIRPLKDGNPPKYSQRARLVAANYQVV 524
>Os08g0368000 Similar to Coatomer delta subunit (Delta-coat protein) (Delta-COP)
Length = 184
Score = 262 bits (669), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 127/171 (74%), Positives = 145/171 (84%)
Query: 1 MVVLAASIISKSGKALVSRQFVDMSRIRIDGLLAAFPKLVGSGKQHTYVETENVRYVYQP 60
MVVLAASIISKSGKALVSRQ+VDM+RIRI+GLLAAFPKLVG+GKQHTY+ETENVRYVYQP
Sbjct: 1 MVVLAASIISKSGKALVSRQYVDMTRIRIEGLLAAFPKLVGNGKQHTYIETENVRYVYQP 60
Query: 61 IEALYLLLITNKQSNILEDLDTLRLLSKLIPEYAPSLDEEGVCKXXXXXXXXXXXXXSLG 120
IE LYL++ITNKQSNILEDLDTLRLLSKL+PEY PSLD++GVCK SLG
Sbjct: 61 IEGLYLVVITNKQSNILEDLDTLRLLSKLVPEYCPSLDDDGVCKTAFELIFAFDEAISLG 120
Query: 121 NKENVTVAQVKQYCEMESHEEKLHKLVMQSKINETKDVMRRKVTEIEKSKT 171
NKE VTV QVK+YCEM+S EE +K +MQ KI ETKD M++KV EIEK++
Sbjct: 121 NKEKVTVQQVKEYCEMDSVEEMEYKQMMQEKIKETKDFMKKKVIEIEKTRV 171
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.314 0.132 0.371
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 15,427,787
Number of extensions: 599429
Number of successful extensions: 1025
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1022
Number of HSP's successfully gapped: 4
Length of query: 518
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 413
Effective length of database: 11,553,331
Effective search space: 4771525703
Effective search space used: 4771525703
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 158 (65.5 bits)