BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0830500 Os01g0830500|AK105801
         (394 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0830500  2OG-Fe(II) oxygenase domain containing protein      471   e-133

>Os01g0830500 2OG-Fe(II) oxygenase domain containing protein
          Length = 394

 Score =  471 bits (1211), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 251/359 (69%), Positives = 251/359 (69%)

Query: 36  NHHHALPSSXXXXXXXXXXLSTILQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG 95
           NHHHALPSS          LSTILQ                                  G
Sbjct: 36  NHHHALPSSGAAGGGTDAALSTILQRLLLSSPAPILRSPLSSRSRAPPSLPPLVSLGSSG 95

Query: 96  TLRLDAAADVGYFHLEGHGVPSQLPSSALAELSLVDASARRASNLLTLGFTXXXXXXXXX 155
           TLRLDAAADVGYFHLEGHGVPSQLPSSALAELSLVDASARRASNLLTLGFT         
Sbjct: 96  TLRLDAAADVGYFHLEGHGVPSQLPSSALAELSLVDASARRASNLLTLGFTEEDQQEADG 155

Query: 156 XXXPALVFDVDDEGEMGXXXXXXXXXXRRMRDVGMQVVAMMSGCPEVGFGEAPFAEGRRK 215
              PALVFDVDDEGEMG          RRMRDVGMQVVAMMSGCPEVGFGEAPFAEGRRK
Sbjct: 156 AEDPALVFDVDDEGEMGALPAAAAEYARRMRDVGMQVVAMMSGCPEVGFGEAPFAEGRRK 215

Query: 216 ARCLMWVSXXXXXXXXXXXXXXXXXXXXXXGIHCQWEASGKEAAPASWVMDDGGEWTAVG 275
           ARCLMWVS                      GIHCQWEASGKEAAPASWVMDDGGEWTAVG
Sbjct: 216 ARCLMWVSKVAAGEAAPPAAGKAKAYPYVVGIHCQWEASGKEAAPASWVMDDGGEWTAVG 275

Query: 276 ARDGALLVTIGNIAQVWSNGKLKKVRGMARPVSSAPGAGHGAEADRLSVTVLITLPLDSV 335
           ARDGALLVTIGNIAQVWSNGKLKKVRGMARPVSSAPGAGHGAEADRLSVTVLITLPLDSV
Sbjct: 276 ARDGALLVTIGNIAQVWSNGKLKKVRGMARPVSSAPGAGHGAEADRLSVTVLITLPLDSV 335

Query: 336 ISPLVPVTXXXXXXXXXXXXXXXXXXXXWRFHSFLLEDLAWRVYNGRLQFKDPLVRYRI 394
           ISPLVPVT                    WRFHSFLLEDLAWRVYNGRLQFKDPLVRYRI
Sbjct: 336 ISPLVPVTDAGEEGGDDEVDGAGDDGDGWRFHSFLLEDLAWRVYNGRLQFKDPLVRYRI 394



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.135    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,389,254
Number of extensions: 305803
Number of successful extensions: 878
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 874
Number of HSP's successfully gapped: 1
Length of query: 394
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 291
Effective length of database: 11,657,759
Effective search space: 3392407869
Effective search space used: 3392407869
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 157 (65.1 bits)