BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0824800 Os01g0824800|AK066200
         (400 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0824800  Conserved hypothetical protein                      594   e-170

>Os01g0824800 Conserved hypothetical protein
          Length = 400

 Score =  594 bits (1532), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 306/383 (79%), Positives = 306/383 (79%)

Query: 18  LQMQVTKKTLKRVISLAETFIAIATGILAAAFSAGKDVHLHRHVLAAGGCFLVVTYLSAL 77
           LQMQVTKKTLKRVISLAETFIAIATGILAAAFSAGKDVHLHRHVLAAGGCFLVVTYLSAL
Sbjct: 18  LQMQVTKKTLKRVISLAETFIAIATGILAAAFSAGKDVHLHRHVLAAGGCFLVVTYLSAL 77

Query: 78  LLIYMKLFLSDHRRLRRWHVRSLQLLCVTSGASLVATNSLLLVXXXXXXXXXXXXXXPVQ 137
           LLIYMKLFLSDHRRLRRWHVRSLQLLCVTSGASLVATNSLLLV              PVQ
Sbjct: 78  LLIYMKLFLSDHRRLRRWHVRSLQLLCVTSGASLVATNSLLLVLIGEGNGLLSLNLLPVQ 137

Query: 138 GIVGVLAYHATPTEGSARDEAFEAQVKSARKXXXXXXXXXXXXXXXXXXGAFSNAALQAM 197
           GIVGVLAYHATPTEGSARDEAFEAQVKSARK                  GAFSNAALQAM
Sbjct: 138 GIVGVLAYHATPTEGSARDEAFEAQVKSARKVALFAAATAFAVQTTLVFGAFSNAALQAM 197

Query: 198 GGRRLDXXXXXXXXXXXXXXXXXTCMPLGFRNQGARDKVLSIVRYLKKGVMXXXXXXXXX 257
           GGRRLD                 TCMPLGFRNQGARDKVLSIVRYLKKGVM         
Sbjct: 198 GGRRLDLSVSFLASALSVFLVVATCMPLGFRNQGARDKVLSIVRYLKKGVMAVLAVTAVT 257

Query: 258 XGQEFXXXXXXXXXFPEITVAAMYYAVSMPXXXXXXXXXRKMEVLPTVVVATFGFGMLGA 317
            GQEF         FPEITVAAMYYAVSMP         RKMEVLPTVVVATFGFGMLGA
Sbjct: 258 LGQEFLGGAAALALFPEITVAAMYYAVSMPADEAAAAADRKMEVLPTVVVATFGFGMLGA 317

Query: 318 AYAALFGTPEYDLYTKALAFTLLTAVVSSLGRVAGPLCNAQRDKSSAAWVTFLSSILPIV 377
           AYAALFGTPEYDLYTKALAFTLLTAVVSSLGRVAGPLCNAQRDKSSAAWVTFLSSILPIV
Sbjct: 318 AYAALFGTPEYDLYTKALAFTLLTAVVSSLGRVAGPLCNAQRDKSSAAWVTFLSSILPIV 377

Query: 378 EMLVAVPLAAKVMVDFLAVPGNG 400
           EMLVAVPLAAKVMVDFLAVPGNG
Sbjct: 378 EMLVAVPLAAKVMVDFLAVPGNG 400



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.326    0.136    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,748,368
Number of extensions: 263726
Number of successful extensions: 715
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 714
Number of HSP's successfully gapped: 1
Length of query: 400
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 297
Effective length of database: 11,657,759
Effective search space: 3462354423
Effective search space used: 3462354423
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 157 (65.1 bits)