BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0814400 Os01g0814400|AK069730
         (374 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0814400  Conserved hypothetical protein                      588   e-168

>Os01g0814400 Conserved hypothetical protein
          Length = 374

 Score =  588 bits (1517), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 301/374 (80%), Positives = 301/374 (80%)

Query: 1   MGGSLVDSSAEGVSSSLCLCHSTSEKAGFEHSSCASSGDGNCEAGIDFGQDDLVVNEIGM 60
           MGGSLVDSSAEGVSSSLCLCHSTSEKAGFEHSSCASSGDGNCEAGIDFGQDDLVVNEIGM
Sbjct: 1   MGGSLVDSSAEGVSSSLCLCHSTSEKAGFEHSSCASSGDGNCEAGIDFGQDDLVVNEIGM 60

Query: 61  AIAEVMHVCSDHDDDEGTDSGEDFDENEGLLSLESDSTDDVVDIDNELVISPTFSSCNAX 120
           AIAEVMHVCSDHDDDEGTDSGEDFDENEGLLSLESDSTDDVVDIDNELVISPTFSSCNA 
Sbjct: 61  AIAEVMHVCSDHDDDEGTDSGEDFDENEGLLSLESDSTDDVVDIDNELVISPTFSSCNAS 120

Query: 121 XXXXXXXXXXXXXXXXTPPLVSAMKGSRAKLGIVTSLSVSWAPDVYDPPVTSGSHTVKGH 180
                           TPPLVSAMKGSRAKLGIVTSLSVSWAPDVYDPPVTSGSHTVKGH
Sbjct: 121 ESSINKSDSGNSSINGTPPLVSAMKGSRAKLGIVTSLSVSWAPDVYDPPVTSGSHTVKGH 180

Query: 181 QRSSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSYRNTXXXXX 240
           QRSSR                                            PSYRNT     
Sbjct: 181 QRSSRKSHYKYKPAKSSSSRSSSGSKKDRKHSRHSSSSSSSSNHKRDRKPSYRNTVGGVS 240

Query: 241 XXXXXXXRNTDASAAQYRDLYSSSGGNRIDIAVPQYSKLSPLVPSESATYRNVYNSTSGS 300
                  RNTDASAAQYRDLYSSSGGNRIDIAVPQYSKLSPLVPSESATYRNVYNSTSGS
Sbjct: 241 VGSSSSSRNTDASAAQYRDLYSSSGGNRIDIAVPQYSKLSPLVPSESATYRNVYNSTSGS 300

Query: 301 RTDPTVPHCSKLSPLVTSESASLAGTVPVLKTLEPIKRSSSCCKEQPLSFLSRQFVAAKY 360
           RTDPTVPHCSKLSPLVTSESASLAGTVPVLKTLEPIKRSSSCCKEQPLSFLSRQFVAAKY
Sbjct: 301 RTDPTVPHCSKLSPLVTSESASLAGTVPVLKTLEPIKRSSSCCKEQPLSFLSRQFVAAKY 360

Query: 361 KGMFSLWSHNQLAS 374
           KGMFSLWSHNQLAS
Sbjct: 361 KGMFSLWSHNQLAS 374



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.310    0.126    0.363 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,072,688
Number of extensions: 442081
Number of successful extensions: 1577
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1575
Number of HSP's successfully gapped: 2
Length of query: 374
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 272
Effective length of database: 11,709,973
Effective search space: 3185112656
Effective search space used: 3185112656
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 157 (65.1 bits)