Os01g0814400 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0814400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	12.1	(0.0163)	R²	:	0.45
β₁	:	--	(--)	R²_dD	:	--	R²_D	:	--
β₂	:	--	(--)	R²_dC	:	--	R²_C	:	--
β₃	:	-1.2	(0.062)	R²_dE	:	0.479	R²_E	:	0.42
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	--	(--)	R²_dD*E	:	--	R²_D*E	:	--
γ₁	:	0.149	(0.0352)	R²_dN8	:	0.0298	R²_N8	:	-0.0292
σ	:	0.304
deviance	:	42.6
__

_____

C
peak time of C	:	--
E
wheather	:	temperature
threshold	:	20.35
memory length	:	13
response mode	:	> th
dose dependency	:	dose dependent
G
type of G	:	no
peak or start time of G	:	--
open length of G	:	--

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
32.82	0.269	12	-0.0804	0.0907	-1.23	-1.34	1.66	0.176	12.9	21.97	14	--	--
34.35	0.273	12.1	-0.334	0.0686	-1.13	-0.964	--	0.104	12.4	21.11	12	--	--
37.95	0.287	12.1	-0.375	0.133	-1.21	--	0.0192	0.104	15	21.87	12	--	--
37.95	0.287	12.1	-0.377	0.134	-1.21	--	--	0.104	15.1	21.87	12	--	--
38.59	0.289	12.1	-0.446	--	-1.08	--	-0.213	0.0719	--	21.26	12	--	--
55.41	0.349	12.1	-0.587	0.326	--	1.2	--	-0.0881	1.78	--	--	--	--
60.92	0.366	12.1	-0.626	0.335	--	--	--	-0.0959	2.4	--	--	--	--
38.6	0.289	12.1	-0.405	--	-1.09	--	--	0.0828	--	21.8	12	--	--
41.33	0.299	12.1	--	0.18	-1.34	--	--	0.171	14.9	21.13	13	--	--
67.54	0.384	12.1	-0.611	--	--	--	--	-0.0876	--	--	--	--	--
71.24	0.395	12.1	--	0.323	--	--	--	-0.0262	2.37	--	--	--	--
42.6	0.304	12.1	--	--	-1.2	--	--	0.149	--	20.35	13	--	--
77.41	0.411	12.1	--	--	--	--	--	-0.0198	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	28.33	temperature	20	270	> th	dose dependent	sin	3	NA
3	28.84	temperature	20	720	> th	dose dependent	rect.	22	15
5	28.97	temperature	20	720	> th	dose dependent	sin	6	NA
9	29.35	temperature	30	720	< th	dose dependent	sin	5	NA
12	29.54	temperature	30	720	< th	dose dependent	rect.	23	15
18	29.71	temperature	20	720	> th	dose dependent	rect.	2	9
19	29.71	temperature	20	720	> th	dose dependent	rect.	1	11
31	29.93	temperature	30	270	< th	dose dependent	sin	1	NA
52	30.29	temperature	30	720	< th	dose dependent	rect.	3	7
69	30.52	temperature	25	720	< th	dose dependent	rect.	4	5
130	31.13	temperature	20	270	> th	dose dependent	rect.	3	13
139	31.24	temperature	30	270	< th	dose dependent	rect.	5	13
159	31.40	temperature	20	270	> th	dose dependent	rect.	18	22
264	32.04	temperature	20	720	< th	dose independent	rect.	5	2
366	32.74	temperature	20	10	> th	dose dependent	rect.	23	23
374	32.80	temperature	30	270	< th	dose dependent	rect.	3	18
383	32.86	temperature	10	10	> th	dose dependent	sin	22	NA
453	33.18	temperature	30	270	< th	dose dependent	rect.	1	21
533	33.60	temperature	20	10	> th	dose dependent	no	NA	NA
536	33.62	temperature	20	720	> th	dose independent	rect.	2	9
538	33.64	temperature	20	10	> th	dose dependent	rect.	1	23
544	33.69	temperature	20	10	> th	dose dependent	rect.	21	23
547	33.71	temperature	20	720	> th	dose independent	rect.	1	12
567	33.83	temperature	20	10	> th	dose dependent	rect.	23	21
573	33.87	temperature	20	720	> th	dose independent	sin	5	NA
613	34.03	temperature	25	1440	< th	dose dependent	rect.	20	9
617	34.05	temperature	20	720	< th	dose independent	sin	6	NA
619	34.05	temperature	25	1440	< th	dose dependent	rect.	21	1
647	34.13	temperature	25	1440	< th	dose dependent	rect.	21	5
662	34.16	temperature	20	10	> th	dose dependent	rect.	3	23
745	34.41	temperature	20	10	> th	dose dependent	rect.	1	19
775	34.48	temperature	20	10	> th	dose dependent	rect.	1	21
835	34.60	temperature	15	1440	> th	dose dependent	rect.	21	8
866	34.69	temperature	25	1440	< th	dose dependent	sin	11	NA
906	34.74	temperature	15	1440	> th	dose dependent	rect.	3	2
915	34.75	temperature	15	1440	> th	dose dependent	rect.	1	4
919	34.75	temperature	25	10	> th	dose dependent	rect.	3	19
975	34.83	temperature	25	1440	< th	dose dependent	rect.	1	1