BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0807900 Os01g0807900|AK072454
(539 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0807900 Similar to Dihydropyrimidinase (Dihydropyrimid... 1011 0.0
>Os01g0807900 Similar to Dihydropyrimidinase (Dihydropyrimidine amidohydrolase)
(EC 3.5.2.2)
Length = 539
Score = 1011 bits (2614), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 497/539 (92%), Positives = 497/539 (92%)
Query: 1 MAMPCRLHGDIXXXXXXXXXXXXXXXXXNEFCAAVXXXXXXXXXXXXXXXXXXXXXXXXX 60
MAMPCRLHGDI NEFCAAV
Sbjct: 1 MAMPCRLHGDILLLLLGAVAVAVAHPAANEFCAAVGGGSGGCGVGGGGGGDGRRILIRGG 60
Query: 61 TVVNAHRVEEADVYVEDGVIVAVRPNIPVGDDHVKVIDATGKYVMPGGIDPHTHLEMEFM 120
TVVNAHRVEEADVYVEDGVIVAVRPNIPVGDDHVKVIDATGKYVMPGGIDPHTHLEMEFM
Sbjct: 61 TVVNAHRVEEADVYVEDGVIVAVRPNIPVGDDHVKVIDATGKYVMPGGIDPHTHLEMEFM 120
Query: 121 GTVTIDDFFSGHAAALAGGTTMHIDFVIPVNGNLTAGLESYKQKAEKSAMDYGFHMAITK 180
GTVTIDDFFSGHAAALAGGTTMHIDFVIPVNGNLTAGLESYKQKAEKSAMDYGFHMAITK
Sbjct: 121 GTVTIDDFFSGHAAALAGGTTMHIDFVIPVNGNLTAGLESYKQKAEKSAMDYGFHMAITK 180
Query: 181 WNDDVSREMETMVKEHGINSFKFFMAYKGSLMVTDDLLLQGLQKCKSLGALAMVHAENGD 240
WNDDVSREMETMVKEHGINSFKFFMAYKGSLMVTDDLLLQGLQKCKSLGALAMVHAENGD
Sbjct: 181 WNDDVSREMETMVKEHGINSFKFFMAYKGSLMVTDDLLLQGLQKCKSLGALAMVHAENGD 240
Query: 241 AVAEGQQRMIDLGITGPEGHALSRPPVLEGEATARAIRLAKFVNTPLYVVHVMSIDAMDE 300
AVAEGQQRMIDLGITGPEGHALSRPPVLEGEATARAIRLAKFVNTPLYVVHVMSIDAMDE
Sbjct: 241 AVAEGQQRMIDLGITGPEGHALSRPPVLEGEATARAIRLAKFVNTPLYVVHVMSIDAMDE 300
Query: 301 IAKAKREGQRVIGEPVVSGLVLDDSWLWDPDFMIASKYVMSPPIREAGHNKALQVALSSG 360
IAKAKREGQRVIGEPVVSGLVLDDSWLWDPDFMIASKYVMSPPIREAGHNKALQVALSSG
Sbjct: 301 IAKAKREGQRVIGEPVVSGLVLDDSWLWDPDFMIASKYVMSPPIREAGHNKALQVALSSG 360
Query: 361 ILQLVGTDHCTFNSTQKAFGSDDFRKIPNGVNGIEERMHIIWDSMVETGRISVSDYVRVT 420
ILQLVGTDHCTFNSTQKAFGSDDFRKIPNGVNGIEERMHIIWDSMVETGRISVSDYVRVT
Sbjct: 361 ILQLVGTDHCTFNSTQKAFGSDDFRKIPNGVNGIEERMHIIWDSMVETGRISVSDYVRVT 420
Query: 421 STECAKIFNIYPRKGAILEGSDADIIILNPERSFVMGAHTHHSRSNTNVYEGRKGKGMVE 480
STECAKIFNIYPRKGAILEGSDADIIILNPERSFVMGAHTHHSRSNTNVYEGRKGKGMVE
Sbjct: 421 STECAKIFNIYPRKGAILEGSDADIIILNPERSFVMGAHTHHSRSNTNVYEGRKGKGMVE 480
Query: 481 VTISRGRVVWEDGILNVVPGSGRYVRTPPYSYLFDGIEKSDAAYRASLRAPVKRGKAAA 539
VTISRGRVVWEDGILNVVPGSGRYVRTPPYSYLFDGIEKSDAAYRASLRAPVKRGKAAA
Sbjct: 481 VTISRGRVVWEDGILNVVPGSGRYVRTPPYSYLFDGIEKSDAAYRASLRAPVKRGKAAA 539
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.136 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 17,430,873
Number of extensions: 727067
Number of successful extensions: 1362
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1362
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 433
Effective length of database: 11,501,117
Effective search space: 4979983661
Effective search space used: 4979983661
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 158 (65.5 bits)