BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0789000 Os01g0789000|Os01g0789000
         (440 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0789000  Cyclin-like F-box domain containing protein         813   0.0  

>Os01g0789000 Cyclin-like F-box domain containing protein
          Length = 440

 Score =  813 bits (2099), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/428 (92%), Positives = 398/428 (92%)

Query: 1   MESDTDLISVLPGEVLQHILSFSRIRAIVXXXXXXXXXXXVIECLQFICLDYRDFKHWKV 60
           MESDTDLISVLPGEVLQHILSFSRIRAIV           VIECLQFICLDYRDFKHWKV
Sbjct: 1   MESDTDLISVLPGEVLQHILSFSRIRAIVRMRRLSRRWMRVIECLQFICLDYRDFKHWKV 60

Query: 61  EKFARFVDNLLLIRSKVDLHTFQLYWFHYLPLNCNDLRKWILYAVKHNVKVLDVELDMYD 120
           EKFARFVDNLLLIRSKVDLHTFQLYWFHYLPLNCNDLRKWILYAVKHNVKVLDVELDMYD
Sbjct: 61  EKFARFVDNLLLIRSKVDLHTFQLYWFHYLPLNCNDLRKWILYAVKHNVKVLDVELDMYD 120

Query: 121 KTALPSRIFTCRSVEELSLQMGEAPDEDLEHVGLVLPDIIQLPSLKKLTLSDVEVDQLSL 180
           KTALPSRIFTCRSVEELSLQMGEAPDEDLEHVGLVLPDIIQLPSLKKLTLSDVEVDQLSL
Sbjct: 121 KTALPSRIFTCRSVEELSLQMGEAPDEDLEHVGLVLPDIIQLPSLKKLTLSDVEVDQLSL 180

Query: 181 NQFIGRSPNLEDLHLINSATYLDLIASKVLKRLTLDGFMHGPKRFTISAPHLVHFECQGC 240
           NQFIGRSPNLEDLHLINSATYLDLIASKVLKRLTLDGFMHGPKRFTISAPHLVHFECQGC
Sbjct: 181 NQFIGRSPNLEDLHLINSATYLDLIASKVLKRLTLDGFMHGPKRFTISAPHLVHFECQGC 240

Query: 241 ALQDVSWGEKPSLESAHIDTWGKKYDGESEFIGVLLSAKTLALFGSDVKFLVMTCSLTQY 300
           ALQDVSWGEKPSLESAHIDTWGKKYDGESEFIGVLLSAKTLALFGSDVKFLVMTCSLTQY
Sbjct: 241 ALQDVSWGEKPSLESAHIDTWGKKYDGESEFIGVLLSAKTLALFGSDVKFLVMTCSLTQY 300

Query: 301 KVMLEKELPACPVFERLTTLEIARKGAETDAMPIDGMTFQCPFLETVIIQCSKGDDGINK 360
           KVMLEKELPACPVFERLTTLEIARKGAETDAMPIDGMTFQCPFLETVIIQCSKGDDGINK
Sbjct: 301 KVMLEKELPACPVFERLTTLEIARKGAETDAMPIDGMTFQCPFLETVIIQCSKGDDGINK 360

Query: 361 LVNVLAANGINPKKIQVNFYEDXXXXXXXXXXXXXXXXXXXLCNFEKMAKKNPEWVDESR 420
           LVNVLAANGINPKKIQVNFYED                   LCNFEKMAKKNPEWVDESR
Sbjct: 361 LVNVLAANGINPKKIQVNFYEDIEEMERAENRRIIEEREKELCNFEKMAKKNPEWVDESR 420

Query: 421 YADSNPET 428
           YADSNPET
Sbjct: 421 YADSNPET 428



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.322    0.139    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,996,925
Number of extensions: 496295
Number of successful extensions: 1215
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1216
Number of HSP's successfully gapped: 1
Length of query: 440
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 336
Effective length of database: 11,605,545
Effective search space: 3899463120
Effective search space used: 3899463120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 157 (65.1 bits)