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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0789000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cyclin-like F-box domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.93 (0.0299) R2 : 0.000305
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0235 (0.0629) R2dN8 : 0.000394 R2N8 : 0.000305
σ : 0.563
deviance : 145.4
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
135.83 0.548 2.93 0.204 0.126 0.629 0.188 2.18 0.00936 22.4 54.52 15 -- --
140.07 0.551 2.91 0.176 0.0895 0.62 0.124 -- 0.089 22.8 59.92 15 -- --
134.98 0.541 2.93 0.209 0.0622 0.791 -- 1.91 -0.0226 23.5 60 15 -- --
138.44 0.548 2.93 0.197 0.121 1 -- -- 0.0149 22.6 60 15 -- --
135.19 0.542 2.92 0.196 -- 0.653 -- 2.33 0.00483 -- 61.42 14 -- --
143.34 0.561 2.93 0.241 0.0816 -- -0.115 -- 0.00349 22.1 -- -- -- --
143.38 0.561 2.93 0.246 0.0841 -- -- -- 0.00408 21.5 -- -- -- --
139.33 0.55 2.92 0.234 -- 0.956 -- -- 0.0194 -- 60 15 -- --
139.82 0.551 2.93 -- 0.124 1.04 -- -- -0.00405 22.6 60 15 -- --
143.8 0.56 2.92 0.246 -- -- -- -- 0.00385 -- -- -- -- --
144.98 0.563 2.93 -- 0.0845 -- -- -- -0.0233 21.7 -- -- -- --
140.78 0.553 2.93 -- -- 0.971 -- -- -0.00676 -- 60 15 -- --
145.4 0.563 2.93 -- -- -- -- -- -0.0235 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 133.10 temperature 25.0 90 < th dose dependent rect. 10 6
4 134.07 humidity 90.0 720 > th dose dependent rect. 10 1
6 134.08 humidity 90.0 720 > th dose independent rect. 10 2
9 134.11 precipitation 0.1 720 > th dose independent rect. 9 2
12 134.11 precipitation 0.1 720 > th dose dependent rect. 9 2
42 134.91 wind 1.0 10 < th dose dependent rect. 11 1
55 135.16 wind 1.0 90 < th dose dependent rect. 11 1
57 135.30 humidity 90.0 270 > th dose independent rect. 9 7
58 135.44 temperature 25.0 90 < th dose dependent rect. 14 1
59 135.53 humidity 90.0 720 < th dose independent rect. 9 2
66 135.92 wind 1.0 10 < th dose independent rect. 11 1
68 135.93 temperature 25.0 10 < th dose independent rect. 15 1
92 136.18 humidity 90.0 90 > th dose dependent rect. 13 3
95 136.25 humidity 90.0 90 > th dose independent rect. 13 3
99 136.29 humidity 90.0 90 > th dose independent rect. 14 1
103 136.29 humidity 90.0 90 > th dose dependent rect. 14 1
108 136.34 radiation 1.0 10 < th dose independent rect. 11 5
112 136.35 radiation 1.0 10 < th dose independent rect. 15 1
124 136.38 wind 1.0 90 < th dose independent rect. 11 1
172 136.68 radiation 10.0 30 > th dose independent rect. 17 16
191 136.86 radiation 10.0 270 < th dose dependent rect. 8 7
193 136.95 temperature 25.0 30 < th dose independent rect. 11 6
195 136.96 wind 1.0 90 < th dose dependent rect. 6 6
202 137.07 radiation 40.0 10 > th dose dependent rect. 11 1
203 137.07 radiation 1.0 10 < th dose dependent rect. 15 1
210 137.10 radiation 1.0 720 < th dose dependent rect. 20 10
215 137.14 temperature 25.0 30 < th dose independent rect. 7 10
224 137.17 radiation 10.0 10 > th dose dependent rect. 8 1
235 137.22 humidity 50.0 4320 > th dose independent rect. 9 1
236 137.23 precipitation 0.1 720 > th dose independent rect. 6 1
237 137.23 precipitation 0.1 720 > th dose dependent rect. 6 1
249 137.31 radiation 20.0 30 > th dose independent rect. 7 2
265 137.32 humidity 90.0 270 < th dose independent rect. 8 11
266 137.33 temperature 25.0 270 < th dose independent rect. 11 5
272 137.38 radiation 20.0 270 < th dose dependent rect. 19 21
274 137.40 atmosphere 1010.0 1440 < th dose independent rect. 20 2
275 137.40 temperature 10.0 720 > th dose dependent rect. 9 1
276 137.42 atmosphere 1010.0 1440 < th dose independent rect. 17 1
285 137.49 temperature 10.0 90 > th dose dependent rect. 9 12
288 137.50 humidity 90.0 270 > th dose dependent rect. 9 7
295 137.53 radiation 10.0 30 > th dose dependent rect. 17 16
308 137.61 atmosphere 1010.0 1440 > th dose independent rect. 20 1
320 137.68 atmosphere 1005.0 90 > th dose dependent rect. 15 1
344 137.81 radiation 1.0 720 < th dose dependent rect. 5 1
350 137.88 temperature 25.0 30 > th dose independent rect. 9 12
358 137.91 radiation 10.0 30 > th dose dependent rect. 6 3
374 137.95 temperature 25.0 270 < th dose dependent sin 23 NA
375 137.96 atmosphere 1005.0 10 < th dose independent rect. 21 12
391 138.01 radiation 10.0 90 < th dose independent rect. 17 18
392 138.01 radiation 10.0 90 < th dose dependent rect. 14 1
404 138.04 atmosphere 1015.0 10 < th dose dependent rect. 8 1
408 138.05 atmosphere 1010.0 1440 < th dose independent rect. 16 6
410 138.06 radiation 10.0 720 > th dose independent rect. 8 2
418 138.08 temperature 25.0 30 < th dose independent rect. 22 19
423 138.11 humidity 50.0 270 > th dose dependent rect. 19 21
424 138.12 radiation 40.0 10 > th dose independent rect. 11 1
429 138.13 wind 3.0 10 < th dose independent rect. 8 1
436 138.14 radiation 40.0 30 < th dose independent rect. 9 12
445 138.16 humidity 70.0 90 > th dose independent rect. 21 19
448 138.17 humidity 90.0 10 < th dose independent rect. 8 1
454 138.18 atmosphere 1010.0 1440 < th dose independent rect. 12 1
469 138.22 wind 1.0 10 > th dose independent rect. 8 1
475 138.22 humidity 60.0 90 > th dose dependent rect. 7 9
477 138.23 radiation 30.0 10 < th dose independent rect. 8 1
479 138.23 radiation 10.0 90 < th dose independent rect. 17 20
501 138.24 humidity 90.0 14400 > th dose dependent rect. 4 2
543 138.26 radiation 1.0 720 < th dose independent rect. 20 11
571 138.29 radiation 10.0 270 < th dose independent rect. 19 21
602 138.32 temperature 15.0 10 > th dose independent rect. 9 23
607 138.33 temperature 20.0 10 > th dose independent rect. 8 1
608 138.33 humidity 70.0 10 > th dose independent rect. 8 1
621 138.36 wind 1.0 10 > th dose dependent rect. 8 1
653 138.39 temperature 10.0 10 > th dose independent rect. 8 1
655 138.39 temperature 30.0 10 < th dose independent rect. 8 1
656 138.39 humidity 50.0 10 > th dose independent rect. 8 1
658 138.39 atmosphere 995.0 10 > th dose independent rect. 8 1
659 138.39 atmosphere 1010.0 10 < th dose independent rect. 8 1
663 138.39 precipitation 0.1 10 < th dose independent rect. 8 1
665 138.39 precipitation 0.1 10 < th dose dependent rect. 8 1
673 138.40 radiation 10.0 90 < th dose independent rect. 17 15
680 138.41 temperature 10.0 10 > th dose dependent rect. 8 1
689 138.43 humidity 90.0 10 < th dose dependent rect. 8 1
694 138.44 wind 9.0 10 < th dose dependent rect. 8 1
724 138.47 temperature 25.0 10 < th dose independent rect. 12 1
733 138.48 temperature 25.0 30 < th dose independent rect. 7 18
739 138.49 atmosphere 1005.0 10 > th dose independent rect. 16 18
741 138.50 temperature 25.0 270 < th dose independent rect. 11 2
752 138.51 humidity 50.0 10 > th dose dependent rect. 8 1
756 138.52 radiation 1.0 720 > th dose dependent rect. 9 1
770 138.54 temperature 30.0 30 < th dose dependent rect. 8 1
773 138.55 wind 1.0 720 > th dose independent rect. 5 3
779 138.57 wind 7.0 43200 > th dose independent rect. 18 1
797 138.58 wind 9.0 10 < th dose independent rect. 9 23
854 138.62 atmosphere 995.0 10 > th dose dependent rect. 8 1
893 138.64 temperature 25.0 270 < th dose dependent rect. 8 13
894 138.65 temperature 25.0 30 < th dose independent rect. 11 14
917 138.66 atmosphere 1010.0 1440 > th dose independent rect. 12 1
928 138.67 atmosphere 1005.0 10 > th dose independent rect. 17 15
937 138.68 temperature 25.0 720 > th dose independent rect. 9 3
945 138.69 humidity 70.0 10 > th dose independent rect. 21 20
962 138.72 temperature 10.0 1440 > th dose independent rect. 9 1
965 138.72 atmosphere 995.0 1440 > th dose independent rect. 9 1
968 138.72 atmosphere 1015.0 1440 < th dose independent rect. 9 1
977 138.72 temperature 10.0 1440 > th dose independent rect. 10 23
991 138.73 radiation 40.0 30 < th dose dependent rect. 8 1
997 138.74 humidity 50.0 30 > th dose independent rect. 9 23