BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0780600 Os01g0780600|AK120823
         (425 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0780600  Conserved hypothetical protein                      239   2e-63

>Os01g0780600 Conserved hypothetical protein
          Length = 425

 Score =  239 bits (611), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 158/312 (50%), Positives = 158/312 (50%)

Query: 57  AVEWHRLGGHATXXXXXXXXXXXXXXXXXXXXXXXXPEPAHVQATDPGDGGEGDAPREHR 116
           AVEWHRLGGHAT                        PEPAHVQATDPGDGGEGDAPREHR
Sbjct: 57  AVEWHRLGGHATGRGRRSGRGGGVLRDGLVVRGRVVPEPAHVQATDPGDGGEGDAPREHR 116

Query: 117 RRDHVLRGAVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPEVLPXXXXX 176
           RRDHVLRGAVP                                       PEVLP     
Sbjct: 117 RRDHVLRGAVPARAEAEHQLQQRQLRRRLRRRQPQHHAARRQRVGAVGGRPEVLPGGDRG 176

Query: 177 XXXXXXXXXLHQVPARDAPHGDAPPRQPAVPGEPGTXXXXXXXXXXXXXXXXXXXXXXXX 236
                    LHQVPARDAPHGDAPPRQPAVPGEPGT                        
Sbjct: 177 AAAGEEGRRLHQVPARDAPHGDAPPRQPAVPGEPGTADRRAAGGRLPRRPARPKPRLHRR 236

Query: 237 XXXXXXXXXEDTGLLHVVHGRARDRVHVAXXXXXXQPAWGAPCREPLVAVADHHGCQAHG 296
                    EDTGLLHVVHGRARDRVHVA      QPAWGAPCREPLVAVADHHGCQAHG
Sbjct: 237 DALRHRLRAEDTGLLHVVHGRARDRVHVAGGGGGGQPAWGAPCREPLVAVADHHGCQAHG 296

Query: 297 RVPCRGGARHQPQAAQVPGXXXXXXXXXXXXXXXXXXXXGHIXXXXXXXXXXXXXXXXXX 356
           RVPCRGGARHQPQAAQVPG                    GHI                  
Sbjct: 297 RVPCRGGARHQPQAAQVPGARRRRTRLRAPRRRRHLPRHGHIPQVAPVAVGVGEGAAVQA 356

Query: 357 DELPEAVAGGVH 368
           DELPEAVAGGVH
Sbjct: 357 DELPEAVAGGVH 368



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.138    0.462 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,840,411
Number of extensions: 231312
Number of successful extensions: 833
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 830
Number of HSP's successfully gapped: 2
Length of query: 425
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 321
Effective length of database: 11,605,545
Effective search space: 3725379945
Effective search space used: 3725379945
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 157 (65.1 bits)