BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0775100 Os01g0775100|AK101217
         (783 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0775100  Plus-3 domain containing protein                   1639   0.0  

>Os01g0775100 Plus-3 domain containing protein
          Length = 783

 Score = 1639 bits (4244), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 783/783 (100%), Positives = 783/783 (100%)

Query: 1   MDVMNEGKETSDNFCVDKLEKEDEVGSCPTRYCNDTSHSLGSASRKEVMPIIAEKQAFCA 60
           MDVMNEGKETSDNFCVDKLEKEDEVGSCPTRYCNDTSHSLGSASRKEVMPIIAEKQAFCA
Sbjct: 1   MDVMNEGKETSDNFCVDKLEKEDEVGSCPTRYCNDTSHSLGSASRKEVMPIIAEKQAFCA 60

Query: 61  TTVHDERSWAANAWRARLVKAISQKDSVLPKNADNIHSTSAFGSIGNTENMPGKLTSMLG 120
           TTVHDERSWAANAWRARLVKAISQKDSVLPKNADNIHSTSAFGSIGNTENMPGKLTSMLG
Sbjct: 61  TTVHDERSWAANAWRARLVKAISQKDSVLPKNADNIHSTSAFGSIGNTENMPGKLTSMLG 120

Query: 121 NRNDSSQDQAMQEKHKDGLIVARCESVSAVNPVARCELASGVNPLARHESTSGCNPRKLE 180
           NRNDSSQDQAMQEKHKDGLIVARCESVSAVNPVARCELASGVNPLARHESTSGCNPRKLE
Sbjct: 121 NRNDSSQDQAMQEKHKDGLIVARCESVSAVNPVARCELASGVNPLARHESTSGCNPRKLE 180

Query: 181 KGKEKLIYDMSNCVSNTNEGDDSNESIESCPSTKAPKRKHGQFSAAEMTSGNKRCRREDN 240
           KGKEKLIYDMSNCVSNTNEGDDSNESIESCPSTKAPKRKHGQFSAAEMTSGNKRCRREDN
Sbjct: 181 KGKEKLIYDMSNCVSNTNEGDDSNESIESCPSTKAPKRKHGQFSAAEMTSGNKRCRREDN 240

Query: 241 ESSCSGLFHKNDSSFFNWMSTLTNGVKVFDETTAVPLNQKFSAATGEEFPTNPVPLQNNC 300
           ESSCSGLFHKNDSSFFNWMSTLTNGVKVFDETTAVPLNQKFSAATGEEFPTNPVPLQNNC
Sbjct: 241 ESSCSGLFHKNDSSFFNWMSTLTNGVKVFDETTAVPLNQKFSAATGEEFPTNPVPLQNNC 300

Query: 301 GVPLQSVGFNSLFQSLYSQNVMITSRNTCHQSESSYTANRLTLGFKSSKPVSMGRETLNV 360
           GVPLQSVGFNSLFQSLYSQNVMITSRNTCHQSESSYTANRLTLGFKSSKPVSMGRETLNV
Sbjct: 301 GVPLQSVGFNSLFQSLYSQNVMITSRNTCHQSESSYTANRLTLGFKSSKPVSMGRETLNV 360

Query: 361 ATETLAAGRIQMDSYGDRGAFQNQMGIFPLRAERNQNGFHGSSSNAASGHKDDFSESLWV 420
           ATETLAAGRIQMDSYGDRGAFQNQMGIFPLRAERNQNGFHGSSSNAASGHKDDFSESLWV
Sbjct: 361 ATETLAAGRIQMDSYGDRGAFQNQMGIFPLRAERNQNGFHGSSSNAASGHKDDFSESLWV 420

Query: 421 SRLLPKTPMKVMDTTRCDEETDFCSANPKGLGDSSSPQDFNVEKELNNSQYFTSKGSDNE 480
           SRLLPKTPMKVMDTTRCDEETDFCSANPKGLGDSSSPQDFNVEKELNNSQYFTSKGSDNE
Sbjct: 421 SRLLPKTPMKVMDTTRCDEETDFCSANPKGLGDSSSPQDFNVEKELNNSQYFTSKGSDNE 480

Query: 481 TTSSKCAAPQDENKPSETMASIFAKRLDALRHANTSAVHVAITCDHGTPKGRNHKTSSFV 540
           TTSSKCAAPQDENKPSETMASIFAKRLDALRHANTSAVHVAITCDHGTPKGRNHKTSSFV
Sbjct: 481 TTSSKCAAPQDENKPSETMASIFAKRLDALRHANTSAVHVAITCDHGTPKGRNHKTSSFV 540

Query: 541 VSYNSHDEQESGQKTHKSSGGEGRIVLWTGDKGKEQLSPGNDKELGEKVLSKHENQNCEG 600
           VSYNSHDEQESGQKTHKSSGGEGRIVLWTGDKGKEQLSPGNDKELGEKVLSKHENQNCEG
Sbjct: 541 VSYNSHDEQESGQKTHKSSGGEGRIVLWTGDKGKEQLSPGNDKELGEKVLSKHENQNCEG 600

Query: 601 SSDGKVVPPKCNLETNTYIEEIDRKRLQNKEGAPNSMENQPDNKQMVPYGIVPNDVYDEA 660
           SSDGKVVPPKCNLETNTYIEEIDRKRLQNKEGAPNSMENQPDNKQMVPYGIVPNDVYDEA
Sbjct: 601 SSDGKVVPPKCNLETNTYIEEIDRKRLQNKEGAPNSMENQPDNKQMVPYGIVPNDVYDEA 660

Query: 661 SVVFGALQRLRLSRSDIIRWMRSPVMHTTLDGFFLRLRFGKWEEALGGTGYHVARINGVL 720
           SVVFGALQRLRLSRSDIIRWMRSPVMHTTLDGFFLRLRFGKWEEALGGTGYHVARINGVL
Sbjct: 661 SVVFGALQRLRLSRSDIIRWMRSPVMHTTLDGFFLRLRFGKWEEALGGTGYHVARINGVL 720

Query: 721 DKNRLSVTIRNSTCQVDSRFVSNHDFHQDELKAWWSAAMKSGWKLPSQEELNTKLREREL 780
           DKNRLSVTIRNSTCQVDSRFVSNHDFHQDELKAWWSAAMKSGWKLPSQEELNTKLREREL
Sbjct: 721 DKNRLSVTIRNSTCQVDSRFVSNHDFHQDELKAWWSAAMKSGWKLPSQEELNTKLREREL 780

Query: 781 LRF 783
           LRF
Sbjct: 781 LRF 783



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.312    0.127    0.372 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 27,911,010
Number of extensions: 1218554
Number of successful extensions: 2451
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 2449
Number of HSP's successfully gapped: 1
Length of query: 783
Length of database: 17,035,801
Length adjustment: 109
Effective length of query: 674
Effective length of database: 11,344,475
Effective search space: 7646176150
Effective search space used: 7646176150
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 160 (66.2 bits)