BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0773700 Os01g0773700|AK119161
         (124 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK119225                                                           78   2e-15
Os01g0773700  Similar to Photosystem II reaction center W pr...    77   2e-15

>AK119225 
          Length = 163

 Score = 77.8 bits (190), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/91 (48%), Positives = 44/91 (48%)

Query: 20  GPLGLPQMRARRSERVRCNYSKEXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDERMSTEX 79
           GPLGLPQMRARRSERVRCNYSKE                            VDERMSTE 
Sbjct: 59  GPLGLPQMRARRSERVRCNYSKEAATPAAAVKGAGASLLAMAATAAPAMALVDERMSTEG 118

Query: 80  XXXXXXXXXXXXXXXXXXVFGLIWSLYTIYT 110
                             VFGLIWSLYTIYT
Sbjct: 119 TGLSLGLSNNLLGWILLGVFGLIWSLYTIYT 149



>Os01g0773700 Similar to Photosystem II reaction center W protein (PSII 6.1 kDa
           protein) (Fragment)
          Length = 124

 Score = 77.4 bits (189), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/91 (48%), Positives = 44/91 (48%)

Query: 20  GPLGLPQMRARRSERVRCNYSKEXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDERMSTEX 79
           GPLGLPQMRARRSERVRCNYSKE                            VDERMSTE 
Sbjct: 20  GPLGLPQMRARRSERVRCNYSKEAATPAAAVKGAGASLLAMAATAAPAMALVDERMSTEG 79

Query: 80  XXXXXXXXXXXXXXXXXXVFGLIWSLYTIYT 110
                             VFGLIWSLYTIYT
Sbjct: 80  TGLSLGLSNNLLGWILLGVFGLIWSLYTIYT 110



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.323    0.136    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 1,314,208
Number of extensions: 13909
Number of successful extensions: 14
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 2
Length of query: 124
Length of database: 17,035,801
Length adjustment: 88
Effective length of query: 36
Effective length of database: 12,440,969
Effective search space: 447874884
Effective search space used: 447874884
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 149 (62.0 bits)