Os01g0773700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Photosystem II reaction center W protein (PSII 6.1 kDa protein) (Fragment).
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Os01g0773700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Photosystem II reaction center W protein (PSII 6.1 kDa protein) (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 18.02 | 0.199 | 17 | -0.31 | 0.401 | 0.295 | 0.625 | 1.18 | -0.471 | 1.07 | 5.3 | 5078 | -- | -- |
| 18.94 | 0.203 | 17 | -0.322 | 0.412 | 0.148 | 0.686 | -- | -0.432 | 0.847 | 5.6 | 5024 | -- | -- |
| 19.59 | 0.206 | 17 | -0.339 | 0.398 | 0.273 | -- | 1.25 | -0.479 | 0.869 | 5.3 | 5136 | -- | -- |
| 20.66 | 0.213 | 17 | -0.379 | 0.437 | 0.108 | -- | -- | -0.43 | 0.924 | 5.3 | 5136 | -- | -- |
| 29.26 | 0.252 | 17 | -0.315 | -- | 0.334 | -- | 1.36 | -0.499 | -- | 5.26 | 5199 | -- | -- |
| 19.23 | 0.206 | 17 | -0.381 | 0.41 | -- | 0.654 | -- | -0.428 | 0.814 | -- | -- | -- | -- |
| 21.03 | 0.215 | 17 | -0.405 | 0.408 | -- | -- | -- | -0.431 | 0.677 | -- | -- | -- | -- |
| 30.15 | 0.256 | 17 | -0.302 | -- | 0.312 | -- | -- | -0.437 | -- | 4.4 | 5195 | -- | -- |
| 23.19 | 0.224 | 17 | -- | 0.41 | 0.31 | -- | -- | -0.357 | 0.708 | 7 | 33950 | -- | -- |
| 31.46 | 0.262 | 17 | -0.39 | -- | -- | -- | -- | -0.424 | -- | -- | -- | -- | -- |
| 25.35 | 0.236 | 17 | -- | 0.402 | -- | -- | -- | -0.386 | 0.63 | -- | -- | -- | -- |
| 31.9 | 0.263 | 16.9 | -- | -- | 0.397 | -- | -- | -0.428 | -- | 4.162 | 5215 | -- | -- |
| 35.48 | 0.278 | 17 | -- | -- | -- | -- | -- | -0.38 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 17.15 | humidity | 80.0 | 4320 | > th | dose independent | rect. | 21 | 8 |
| 3 | 17.16 | humidity | 90.0 | 4320 | < th | dose dependent | rect. | 21 | 8 |
| 5 | 17.18 | humidity | 80.0 | 4320 | < th | dose independent | rect. | 21 | 7 |
| 7 | 17.19 | humidity | 80.0 | 4320 | < th | dose independent | rect. | 21 | 5 |
| 9 | 17.19 | humidity | 90.0 | 4320 | < th | dose dependent | rect. | 22 | 5 |
| 13 | 17.21 | humidity | 80.0 | 4320 | < th | dose dependent | rect. | 21 | 2 |
| 20 | 17.25 | humidity | 80.0 | 4320 | < th | dose independent | rect. | 21 | 3 |
| 35 | 17.32 | humidity | 70.0 | 4320 | > th | dose dependent | rect. | 22 | 4 |
| 38 | 17.33 | humidity | 50.0 | 4320 | > th | dose dependent | rect. | 22 | 4 |
| 57 | 17.37 | humidity | 80.0 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 99 | 17.42 | humidity | 60.0 | 4320 | > th | dose dependent | rect. | 1 | 1 |
| 116 | 17.44 | humidity | 90.0 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 290 | 17.66 | humidity | 80.0 | 4320 | < th | dose independent | rect. | 1 | 1 |
| 291 | 17.66 | humidity | 80.0 | 4320 | < th | dose independent | rect. | 1 | 4 |
| 317 | 17.67 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 15 | 16 |
| 318 | 17.67 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 5 | 2 |
| 341 | 17.68 | humidity | 80.0 | 14400 | > th | dose independent | sin | 13 | NA |
| 342 | 17.68 | humidity | 80.0 | 4320 | > th | dose independent | rect. | 1 | 1 |
| 369 | 17.69 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 18 | 21 |
| 371 | 17.69 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 3 | 1 |
| 521 | 17.76 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 3 | 1 |
| 522 | 17.76 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 3 | 1 |
| 533 | 17.76 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 3 | 1 |
| 574 | 17.78 | humidity | 80.0 | 14400 | < th | dose independent | sin | 13 | NA |
| 607 | 17.79 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 20 | 19 |
| 659 | 17.81 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 16 | 2 |
| 674 | 17.82 | wind | 9.0 | 14400 | > th | dose independent | rect. | 13 | 19 |
| 686 | 17.82 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 7 | 6 |
| 695 | 17.83 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 717 | 17.83 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 20 | 16 |
| 720 | 17.83 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 13 | 21 |
| 742 | 17.84 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 13 | 18 |
| 773 | 17.85 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 7 | 8 |
| 785 | 17.85 | atmosphere | 1015.0 | 10 | < th | dose dependent | rect. | 24 | 15 |
| 788 | 17.85 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 20 | 19 |
| 804 | 17.86 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 19 | 1 |
| 829 | 17.87 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 837 | 17.87 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 839 | 17.87 | humidity | 50.0 | 4320 | > th | dose dependent | rect. | 5 | 2 |
| 863 | 17.87 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 4 | 14 |
| 891 | 17.89 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 905 | 17.89 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 938 | 17.90 | wind | 9.0 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 939 | 17.90 | wind | 9.0 | 14400 | > th | dose independent | rect. | 13 | 6 |
| 945 | 17.90 | wind | 9.0 | 14400 | < th | dose independent | rect. | 13 | 19 |
| 951 | 17.90 | humidity | 70.0 | 14400 | > th | dose dependent | sin | 10 | NA |
| 980 | 17.90 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 20 | 19 |
| 987 | 17.91 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 988 | 17.91 | wind | 1.0 | 43200 | < th | dose independent | rect. | 2 | 2 |
| 989 | 17.91 | wind | 9.0 | 14400 | < th | dose independent | rect. | 14 | 3 |
| 992 | 17.91 | wind | 9.0 | 14400 | < th | dose independent | rect. | 14 | 5 |