BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0767600 Os01g0767600|AK070672
         (422 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0767600  Conserved hypothetical protein                      697   0.0  

>Os01g0767600 Conserved hypothetical protein
          Length = 422

 Score =  697 bits (1800), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/403 (87%), Positives = 354/403 (87%)

Query: 20  VGSSPGLVRQXXXXXXXXXXXXXXISDLREAIVKGLGFQSEELKVSGFDVRDALVGQAVA 79
           VGSSPGLVRQ              ISDLREAIVKGLGFQSEELKVSGFDVRDALVGQAVA
Sbjct: 20  VGSSPGLVRQASSSAAAKPPVPKAISDLREAIVKGLGFQSEELKVSGFDVRDALVGQAVA 79

Query: 80  YEFDIEVGRKVVPVRLLEDVNRWDFVDLPIFRSQADADDTALAEIRRGKSGKRAFDPTLP 139
           YEFDIEVGRKVVPVRLLEDVNRWDFVDLPIFRSQADADDTALAEIRRGKSGKRAFDPTLP
Sbjct: 80  YEFDIEVGRKVVPVRLLEDVNRWDFVDLPIFRSQADADDTALAEIRRGKSGKRAFDPTLP 139

Query: 140 PFQLAGPMELWIQDGDDVRLALPHDVEAGTLKKVVLSDXXXXXXXXXXXXSXXXXXXXXX 199
           PFQLAGPMELWIQDGDDVRLALPHDVEAGTLKKVVLSD            S         
Sbjct: 140 PFQLAGPMELWIQDGDDVRLALPHDVEAGTLKKVVLSDGAVVTVKGAKAVSLRLPLELPL 199

Query: 200 XXNRTTYKGRLSSLISIAQTLRGAARSNQKPLLSLRIEGXXXXXXXXXXXXNDRLKLKRL 259
             NRTTYKGRLSSLISIAQTLRGAARSNQKPLLSLRIEG            NDRLKLKRL
Sbjct: 200 PLNRTTYKGRLSSLISIAQTLRGAARSNQKPLLSLRIEGPTSLSSTPSMSPNDRLKLKRL 259

Query: 260 APGQVELSSRAIPAVTDDDGDGSHAAGLWPLLSLNGSDGSLQGFEELLASVLGKKAGEKG 319
           APGQVELSSRAIPAVTDDDGDGSHAAGLWPLLSLNGSDGSLQGFEELLASVLGKKAGEKG
Sbjct: 260 APGQVELSSRAIPAVTDDDGDGSHAAGLWPLLSLNGSDGSLQGFEELLASVLGKKAGEKG 319

Query: 320 TFKLLKARASAQTYVKMGFAVEKRIADGEVNWSNFPEWKTKPKKLRAHYEVLARVEGGQA 379
           TFKLLKARASAQTYVKMGFAVEKRIADGEVNWSNFPEWKTKPKKLRAHYEVLARVEGGQA
Sbjct: 320 TFKLLKARASAQTYVKMGFAVEKRIADGEVNWSNFPEWKTKPKKLRAHYEVLARVEGGQA 379

Query: 380 IPERIAQVQPFEADEAMSESVLTGNVSMSKTEVVHPPPVYFTL 422
           IPERIAQVQPFEADEAMSESVLTGNVSMSKTEVVHPPPVYFTL
Sbjct: 380 IPERIAQVQPFEADEAMSESVLTGNVSMSKTEVVHPPPVYFTL 422



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.316    0.134    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,182,740
Number of extensions: 467692
Number of successful extensions: 1196
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1196
Number of HSP's successfully gapped: 1
Length of query: 422
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 318
Effective length of database: 11,605,545
Effective search space: 3690563310
Effective search space used: 3690563310
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 157 (65.1 bits)