BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0765300 Os01g0765300|AK101759
(547 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0765300 RNA-binding region RNP-1 (RNA recognition moti... 981 0.0
>Os01g0765300 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 547
Score = 981 bits (2535), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 486/547 (88%), Positives = 486/547 (88%)
Query: 1 MHAVHAYGCMQGSSVWGGGLQIRYLDRLIGSKGFASGIAVGESRHIYVAKVKNKKDKDEV 60
MHAVHAYGCMQGSSVWGGGLQIRYLDRLIGSKGFASGIAVGESRHIYVAKVKNKKDKDEV
Sbjct: 1 MHAVHAYGCMQGSSVWGGGLQIRYLDRLIGSKGFASGIAVGESRHIYVAKVKNKKDKDEV 60
Query: 61 FDELKAAGLKRPCSFTDISSENXXXXXXXXXXXXXXXXXHIRRQLHPDVCSQDKNTSGHE 120
FDELKAAGLKRPCSFTDISSEN HIRRQLHPDVCSQDKNTSGHE
Sbjct: 61 FDELKAAGLKRPCSFTDISSENALLLEFETATDAAAAKAHIRRQLHPDVCSQDKNTSGHE 120
Query: 121 LFVRNIDNSVPDMEFINAFSRFGEVIRWQFNKLDGNCLIDYRSPNAAATAKSHLHGARFG 180
LFVRNIDNSVPDMEFINAFSRFGEVIRWQFNKLDGNCLIDYRSPNAAATAKSHLHGARFG
Sbjct: 121 LFVRNIDNSVPDMEFINAFSRFGEVIRWQFNKLDGNCLIDYRSPNAAATAKSHLHGARFG 180
Query: 181 LKSISVESRSVHDKTLSPSVPMLAPSVSDSSHHEIRNPRVSGYNAGFTVPTERPIYGPSA 240
LKSISVESRSVHDKTLSPSVPMLAPSVSDSSHHEIRNPRVSGYNAGFTVPTERPIYGPSA
Sbjct: 181 LKSISVESRSVHDKTLSPSVPMLAPSVSDSSHHEIRNPRVSGYNAGFTVPTERPIYGPSA 240
Query: 241 PRAPQGILPCPPVSAHRGPVIPPPPIQTSFVRPVYPGPGSPWENTTPNPSFSHASPRMMP 300
PRAPQGILPCPPVSAHRGPVIPPPPIQTSFVRPVYPGPGSPWENTTPNPSFSHASPRMMP
Sbjct: 241 PRAPQGILPCPPVSAHRGPVIPPPPIQTSFVRPVYPGPGSPWENTTPNPSFSHASPRMMP 300
Query: 301 GSSFRMNPPAPLPFIPSSVTPLTQFPGGSAQQSEKRXXXXXXXXXXXXXXFTRQDIXXXX 360
GSSFRMNPPAPLPFIPSSVTPLTQFPGGSAQQSEKR FTRQDI
Sbjct: 301 GSSFRMNPPAPLPFIPSSVTPLTQFPGGSAQQSEKRPPPPPPPPNVAPPPFTRQDIPPPP 360
Query: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXATDPSDSQKQRSHPRWQGSLSKSGLHYCSIYASR 420
ATDPSDSQKQRSHPRWQGSLSKSGLHYCSIYASR
Sbjct: 361 PSPPPLPITQPPSVPPPPNSPPPLQPATDPSDSQKQRSHPRWQGSLSKSGLHYCSIYASR 420
Query: 421 IELDACRYEHAVSEPTGWPSRLDVTKRTDYQHVKTTFSNTPPSKREVCRLLPCSNGDQKG 480
IELDACRYEHAVSEPTGWPSRLDVTKRTDYQHVKTTFSNTPPSKREVCRLLPCSNGDQKG
Sbjct: 421 IELDACRYEHAVSEPTGWPSRLDVTKRTDYQHVKTTFSNTPPSKREVCRLLPCSNGDQKG 480
Query: 481 FRDFISYLKQRECAGVIKIPSVKPLWSRLLFILPPTPEACGMLELPPHPTECLIALILPK 540
FRDFISYLKQRECAGVIKIPSVKPLWSRLLFILPPTPEACGMLELPPHPTECLIALILPK
Sbjct: 481 FRDFISYLKQRECAGVIKIPSVKPLWSRLLFILPPTPEACGMLELPPHPTECLIALILPK 540
Query: 541 ETTAEAT 547
ETTAEAT
Sbjct: 541 ETTAEAT 547
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.134 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 20,462,423
Number of extensions: 1022036
Number of successful extensions: 5474
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 5477
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 441
Effective length of database: 11,501,117
Effective search space: 5071992597
Effective search space used: 5071992597
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 158 (65.5 bits)