Os01g0765300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : RNA-binding region RNP-1 (RNA recognition motif) domain containing protein.
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Os01g0765300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : RNA-binding region RNP-1 (RNA recognition motif) domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 44.16 | 0.312 | 8.09 | 2.02 | 0.699 | 0.0561 | 0.0829 | -2.55 | 0.368 | 9.98 | 24.8 | 1768 | -- | -- |
| 50.5 | 0.334 | 8.19 | 1.26 | 0.686 | -0.123 | -0.053 | -- | 0.096 | 9.51 | 24.8 | 1768 | -- | -- |
| 44.18 | 0.31 | 8.09 | 2.03 | 0.699 | 0.0548 | -- | -2.55 | 0.367 | 9.96 | 24.8 | 1762 | -- | -- |
| 50.51 | 0.333 | 8.19 | 1.26 | 0.686 | -0.122 | -- | -- | 0.0966 | 9.52 | 24.8 | 1762 | -- | -- |
| 72.06 | 0.395 | 8.09 | 2.06 | -- | 0.307 | -- | -2.64 | 0.441 | -- | 25 | 2073 | -- | -- |
| 51.53 | 0.337 | 8.18 | 1.29 | 0.709 | -- | -0.0015 | -- | 0.159 | 9.94 | -- | -- | -- | -- |
| 51.53 | 0.336 | 8.18 | 1.29 | 0.709 | -- | -- | -- | 0.159 | 9.94 | -- | -- | -- | -- |
| 72.32 | 0.396 | 8.17 | 1.37 | -- | 0.521 | -- | -- | 0.218 | -- | 27.6 | 803 | -- | -- |
| 58.76 | 0.357 | 8.28 | -- | 0.725 | -0.889 | -- | -- | -0.288 | 10 | 21.7 | 47520 | -- | -- |
| 81.75 | 0.422 | 8.19 | 1.28 | -- | -- | -- | -- | 0.159 | -- | -- | -- | -- | -- |
| 95.54 | 0.457 | 8.21 | -- | 0.705 | -- | -- | -- | 0.0156 | 9.8 | -- | -- | -- | -- |
| 90.25 | 0.442 | 8.3 | -- | -- | -0.866 | -- | -- | -0.286 | -- | 22.1 | 47520 | -- | -- |
| 125.23 | 0.522 | 8.23 | -- | -- | -- | -- | -- | 0.0169 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 40.02 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 24 | 2 |
| 2 | 40.40 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 11 | 2 |
| 5 | 40.69 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 19 | 1 |
| 7 | 40.87 | wind | 1.0 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 8 | 41.02 | wind | 1.0 | 43200 | > th | dose independent | rect. | 23 | 3 |
| 9 | 41.08 | wind | 1.0 | 43200 | < th | dose independent | rect. | 19 | 7 |
| 10 | 41.13 | wind | 1.0 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 16 | 41.33 | wind | 1.0 | 43200 | < th | dose independent | rect. | 5 | 3 |
| 18 | 41.40 | wind | 1.0 | 43200 | < th | dose independent | rect. | 23 | 3 |
| 19 | 41.42 | wind | 1.0 | 43200 | > th | dose independent | rect. | 9 | 4 |
| 20 | 41.43 | wind | 1.0 | 43200 | < th | dose independent | rect. | 21 | 5 |
| 21 | 41.45 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 20 | 8 |
| 27 | 41.56 | wind | 1.0 | 43200 | < th | dose independent | rect. | 9 | 4 |
| 32 | 41.69 | wind | 1.0 | 43200 | > th | dose independent | rect. | 19 | 7 |
| 33 | 41.72 | wind | 1.0 | 43200 | > th | dose independent | rect. | 5 | 3 |
| 37 | 41.78 | wind | 1.0 | 43200 | > th | dose independent | rect. | 21 | 5 |
| 40 | 41.80 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 11 | 15 |
| 45 | 41.95 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 8 | 18 |
| 49 | 41.99 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 15 | 11 |
| 54 | 42.08 | wind | 1.0 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 56 | 42.09 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 58 | 42.10 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 60 | 42.10 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 16 | 1 |
| 64 | 42.15 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 16 | 4 |
| 68 | 42.17 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 16 | 1 |
| 77 | 42.26 | wind | 1.0 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 81 | 42.28 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 85 | 42.34 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 87 | 42.34 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 19 | 1 |
| 91 | 42.36 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 16 | 4 |
| 92 | 42.36 | wind | 1.0 | 43200 | < th | dose independent | rect. | 16 | 10 |
| 94 | 42.37 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 4 | 1 |
| 99 | 42.40 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 16 | 4 |
| 100 | 42.40 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 16 | 4 |
| 114 | 42.45 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 4 | 1 |
| 122 | 42.47 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 2 | 3 |
| 124 | 42.48 | wind | 1.0 | 43200 | < th | dose dependent | sin | 17 | NA |
| 138 | 42.53 | humidity | 90.0 | 14400 | < th | dose dependent | rect. | 3 | 1 |
| 159 | 42.65 | wind | 1.0 | 43200 | < th | dose independent | rect. | 24 | 1 |
| 170 | 42.68 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 11 | 9 |
| 177 | 42.70 | wind | 3.0 | 43200 | < th | dose dependent | sin | 13 | NA |
| 184 | 42.73 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 20 | 4 |
| 193 | 42.75 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 19 | 1 |
| 201 | 42.79 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 11 | 9 |
| 209 | 42.83 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 212 | 42.83 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 11 | 9 |
| 215 | 42.83 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 11 | 9 |
| 229 | 42.86 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 2 | 1 |
| 232 | 42.87 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 22 | 2 |
| 247 | 42.90 | wind | 1.0 | 43200 | < th | dose independent | rect. | 8 | 20 |
| 248 | 42.90 | humidity | 80.0 | 14400 | < th | dose dependent | rect. | 5 | 1 |
| 249 | 42.90 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 2 | 3 |
| 252 | 42.91 | wind | 1.0 | 43200 | < th | dose independent | rect. | 10 | 18 |
| 253 | 42.91 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 257 | 42.91 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 20 | 20 |
| 264 | 42.93 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 21 | 2 |
| 279 | 42.96 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 23 | 6 |
| 283 | 42.97 | wind | 1.0 | 43200 | > th | dose independent | rect. | 8 | 20 |
| 309 | 43.01 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 312 | 43.01 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 18 | 3 |
| 318 | 43.02 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 325 | 43.03 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 11 | 6 |
| 344 | 43.05 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 11 | 6 |
| 398 | 43.11 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 11 | 6 |
| 400 | 43.11 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 11 | 6 |
| 411 | 43.13 | wind | 3.0 | 43200 | < th | dose dependent | no | NA | NA |
| 418 | 43.13 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 3 | 23 |
| 450 | 43.18 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 4 | 1 |
| 464 | 43.18 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 23 | 23 |
| 478 | 43.20 | atmosphere | 1010.0 | 14400 | > th | dose dependent | rect. | 4 | 1 |
| 485 | 43.21 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 498 | 43.22 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 4 | 1 |
| 499 | 43.22 | precipitation | 0.1 | 14400 | > th | dose dependent | sin | 19 | NA |
| 508 | 43.23 | atmosphere | 1010.0 | 14400 | > th | dose dependent | rect. | 10 | 1 |
| 518 | 43.24 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 527 | 43.25 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 541 | 43.26 | wind | 3.0 | 43200 | < th | dose independent | rect. | 11 | 20 |
| 550 | 43.27 | temperature | 30.0 | 43200 | < th | dose independent | rect. | 20 | 13 |
| 552 | 43.27 | wind | 9.0 | 14400 | < th | dose dependent | rect. | 12 | 1 |
| 567 | 43.28 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 17 | 2 |
| 571 | 43.28 | temperature | 30.0 | 43200 | < th | dose independent | rect. | 3 | 6 |
| 593 | 43.28 | atmosphere | 1010.0 | 14400 | > th | dose dependent | rect. | 2 | 9 |
| 615 | 43.29 | atmosphere | 1010.0 | 14400 | > th | dose dependent | rect. | 23 | 12 |
| 640 | 43.30 | atmosphere | 1010.0 | 14400 | > th | dose dependent | rect. | 23 | 8 |
| 670 | 43.32 | temperature | 30.0 | 43200 | < th | dose independent | rect. | 6 | 3 |
| 691 | 43.33 | temperature | 30.0 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 698 | 43.33 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 12 | 1 |
| 707 | 43.34 | temperature | 30.0 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 739 | 43.35 | temperature | 30.0 | 43200 | > th | dose dependent | rect. | 8 | 1 |
| 774 | 43.36 | atmosphere | 1010.0 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 776 | 43.36 | humidity | 80.0 | 14400 | < th | dose dependent | rect. | 2 | 5 |
| 785 | 43.37 | wind | 3.0 | 43200 | > th | dose independent | rect. | 11 | 20 |
| 814 | 43.39 | atmosphere | 1010.0 | 14400 | > th | dose dependent | sin | 7 | NA |
| 820 | 43.39 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 5 | 3 |
| 834 | 43.40 | wind | 3.0 | 43200 | < th | dose independent | rect. | 9 | 8 |
| 887 | 43.43 | precipitation | 0.1 | 14400 | > th | dose independent | sin | 20 | NA |
| 894 | 43.43 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 8 | 15 |
| 897 | 43.44 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 935 | 43.46 | precipitation | 0.1 | 14400 | < th | dose independent | sin | 20 | NA |
| 941 | 43.46 | precipitation | 0.1 | 14400 | < th | dose dependent | sin | 20 | NA |
| 993 | 43.49 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 17 | 9 |
| 1000 | 43.49 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 15 | 2 |