BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0759000 Os01g0759000|AK111031
         (268 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0759000  Conserved hypothetical protein                      348   3e-96
Os06g0153600  Conserved hypothetical protein                       84   1e-16

>Os01g0759000 Conserved hypothetical protein
          Length = 268

 Score =  348 bits (892), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 185/268 (69%), Positives = 185/268 (69%)

Query: 1   MDPEPHRVDASLAPNPSRRQPLLRPGKSTAFXXXXXXXXXXXXXXXXLALDLERWEPLGX 60
           MDPEPHRVDASLAPNPSRRQPLLRPGKSTAF                LALDLERWEPLG 
Sbjct: 1   MDPEPHRVDASLAPNPSRRQPLLRPGKSTAFKREERRKRKERKQQERLALDLERWEPLGA 60

Query: 61  XXXXXXXXXXXXXXXLPDKPWVCDXXXXXXXSASWGCGWGXXXXXXXXXXXXXXXXXXXX 120
                          LPDKPWVCD       SASWGCGWG                    
Sbjct: 61  PPRPAAAAASPSRAALPDKPWVCDPPPEPEPSASWGCGWGPPAAEPPREPPVPAAVSPQA 120

Query: 121 XXXXXCRAFFXXXXXXXXXXXXXXXXXXXNVARFFQELLEKDAGLRGFYEAEREKGRFLC 180
                CRAFF                   NVARFFQELLEKDAGLRGFYEAEREKGRFLC
Sbjct: 121 AAVEACRAFFGEHVDHDDGDDEDEEEEEGNVARFFQELLEKDAGLRGFYEAEREKGRFLC 180

Query: 181 LVCEGIGARAGKRFAGCAALVQHAGSVARAGRRMAHRAFADAVGRLLGWSAGRTTALQTD 240
           LVCEGIGARAGKRFAGCAALVQHAGSVARAGRRMAHRAFADAVGRLLGWSAGRTTALQTD
Sbjct: 181 LVCEGIGARAGKRFAGCAALVQHAGSVARAGRRMAHRAFADAVGRLLGWSAGRTTALQTD 240

Query: 241 SDNAGMCDEDIHCEDVPQSAEMEMCPHQ 268
           SDNAGMCDEDIHCEDVPQSAEMEMCPHQ
Sbjct: 241 SDNAGMCDEDIHCEDVPQSAEMEMCPHQ 268



>Os06g0153600 Conserved hypothetical protein
          Length = 337

 Score = 83.6 bits (205), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 45/89 (50%), Positives = 55/89 (61%), Gaps = 1/89 (1%)

Query: 152 ARFFQELLEKDAGLRGFYEAEREKGRFLCLVCEGIGARAGKRFAGCAALVQHAGSVARAG 211
           A FF  L E+DA LRG YE   E G F+C+ C G   +A +RFAGC  LVQHA +  R G
Sbjct: 151 AGFFMGLFERDAALRGHYERGWEGGEFVCMACVGRKGKA-RRFAGCVGLVQHARAATRCG 209

Query: 212 RRMAHRAFADAVGRLLGWSAGRTTALQTD 240
           R  AHRAFA A+ R+LGW   R  ++  D
Sbjct: 210 RPRAHRAFAAAICRVLGWDIDRMPSVVID 238



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.323    0.137    0.457 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,823,807
Number of extensions: 223538
Number of successful extensions: 610
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 606
Number of HSP's successfully gapped: 2
Length of query: 268
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 169
Effective length of database: 11,866,615
Effective search space: 2005457935
Effective search space used: 2005457935
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 155 (64.3 bits)