BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0757500 Os01g0757500|AK121744
         (226 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0757500  HSP20-like chaperone domain containing protein      358   2e-99

>Os01g0757500 HSP20-like chaperone domain containing protein
          Length = 226

 Score =  358 bits (919), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 179/209 (85%), Positives = 179/209 (85%)

Query: 18  GLAKRPRVLSALANEIRAVDAKLAKATEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYV 77
           GLAKRPRVLSALANEIRAVDAKLAKATE                              YV
Sbjct: 18  GLAKRPRVLSALANEIRAVDAKLAKATEPQAPQAVAAGSPPVVAAAAAPAPAAAAGVSYV 77

Query: 78  TLGSFSWDQDAEKIKIYVFLEGVEQDKVETTFKPMSVDTKFHDVKGKNYRCAIPKLHKEI 137
           TLGSFSWDQDAEKIKIYVFLEGVEQDKVETTFKPMSVDTKFHDVKGKNYRCAIPKLHKEI
Sbjct: 78  TLGSFSWDQDAEKIKIYVFLEGVEQDKVETTFKPMSVDTKFHDVKGKNYRCAIPKLHKEI 137

Query: 138 VPEKCKVLVKPTKIIVTLYKASKGNWLDLHFKEDKFKPSMAKEKDPMSGIMDLMKNMYEE 197
           VPEKCKVLVKPTKIIVTLYKASKGNWLDLHFKEDKFKPSMAKEKDPMSGIMDLMKNMYEE
Sbjct: 138 VPEKCKVLVKPTKIIVTLYKASKGNWLDLHFKEDKFKPSMAKEKDPMSGIMDLMKNMYEE 197

Query: 198 GDEDMKRTIAKAWSDARSGKTADSVRGLP 226
           GDEDMKRTIAKAWSDARSGKTADSVRGLP
Sbjct: 198 GDEDMKRTIAKAWSDARSGKTADSVRGLP 226



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.315    0.131    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,609,246
Number of extensions: 198914
Number of successful extensions: 443
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 442
Number of HSP's successfully gapped: 1
Length of query: 226
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 129
Effective length of database: 11,971,043
Effective search space: 1544264547
Effective search space used: 1544264547
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 154 (63.9 bits)