BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0750800 Os01g0750800|AK119318
         (71 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0750800  Conserved hypothetical protein                      147   2e-36
Os01g0732100  Conserved hypothetical protein                      132   4e-32

>Os01g0750800 Conserved hypothetical protein
          Length = 71

 Score =  147 bits (371), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 71/71 (100%), Positives = 71/71 (100%)

Query: 1  MGGGMEVHKNKWIEEWNAGRENLEFNFRWTRRSLAVVGLFGLAVPILVYKGIVREFHMQD 60
          MGGGMEVHKNKWIEEWNAGRENLEFNFRWTRRSLAVVGLFGLAVPILVYKGIVREFHMQD
Sbjct: 1  MGGGMEVHKNKWIEEWNAGRENLEFNFRWTRRSLAVVGLFGLAVPILVYKGIVREFHMQD 60

Query: 61 EDAGRPYRKFL 71
          EDAGRPYRKFL
Sbjct: 61 EDAGRPYRKFL 71



>Os01g0732100 Conserved hypothetical protein
          Length = 155

 Score =  132 bits (333), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 63/65 (96%), Positives = 64/65 (98%)

Query: 7   VHKNKWIEEWNAGRENLEFNFRWTRRSLAVVGLFGLAVPILVYKGIVREFHMQDEDAGRP 66
           VHKN+WIEEWNAGRENLEFNFRWTRRSLAVVGLFGLAVPILVYKGIVREFHMQDEDAGRP
Sbjct: 91  VHKNRWIEEWNAGRENLEFNFRWTRRSLAVVGLFGLAVPILVYKGIVREFHMQDEDAGRP 150

Query: 67  YRKFL 71
            RKFL
Sbjct: 151 PRKFL 155



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.325    0.143    0.468 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,903,599
Number of extensions: 98266
Number of successful extensions: 185
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 185
Number of HSP's successfully gapped: 2
Length of query: 71
Length of database: 17,035,801
Length adjustment: 42
Effective length of query: 29
Effective length of database: 14,842,813
Effective search space: 430441577
Effective search space used: 430441577
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 149 (62.0 bits)