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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0750800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.3 (0.0138) R2 : 0.0105
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0637 (0.029) R2dN8 : 0.0135 R2N8 : 0.0105
σ : 0.259
deviance : 30.87
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
22.77 0.224 10.3 -0.518 0.185 0.365 0.079 -0.256 -0.194 9.01 0.6099 11639 -- --
22.88 0.223 10.3 -0.512 0.185 0.435 0.0802 -- -0.194 8.98 0.6 11661 -- --
22.79 0.222 10.3 -0.517 0.183 0.365 -- -0.258 -0.194 8.86 0.6094 11664 -- --
22.88 0.223 10.3 -0.506 0.178 0.433 -- -- -0.199 8.81 0.6024 11664 -- --
24.7 0.231 10.3 -0.517 -- 0.373 -- -0.27 -0.189 -- 0.61 11686 -- --
26.11 0.24 10.3 -0.312 0.195 -- 0.0553 -- -0.0991 9.26 -- -- -- --
26.12 0.239 10.3 -0.31 0.195 -- -- -- -0.099 9.24 -- -- -- --
24.76 0.232 10.3 -0.504 -- 0.447 -- -- -0.196 -- 0.6014 11688 -- --
28.01 0.246 10.3 -- 0.211 0.314 -- -- -0.185 8.15 1.5 12040 -- --
28.33 0.249 10.3 -0.311 -- -- -- -- -0.0981 -- -- -- -- --
28.65 0.25 10.3 -- 0.195 -- -- -- -0.0645 9.36 -- -- -- --
28.62 0.25 10.3 -- -- 0.142 -- -- -0.0636 -- 0.6014 11688 -- --
30.87 0.259 10.3 -- -- -- -- -- -0.0637 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 21.61 temperature 20 720 > th dose independent rect. 6 1
2 21.96 radiation 10 10 < th dose independent rect. 6 5
6 22.08 temperature 20 720 > th dose dependent rect. 6 1
8 22.12 radiation 10 10 < th dose independent rect. 6 8
11 22.16 radiation 20 10 < th dose dependent rect. 6 4
14 22.24 temperature 15 720 > th dose dependent rect. 4 3
16 22.28 temperature 25 10 > th dose independent rect. 5 4
32 22.49 temperature 20 270 > th dose dependent rect. 3 6
35 22.55 humidity 90 14400 < th dose independent rect. 23 8
44 22.60 atmosphere 1005 14400 > th dose independent rect. 16 1
45 22.60 atmosphere 1005 14400 < th dose independent rect. 16 1
50 22.63 humidity 90 14400 < th dose independent rect. 22 6
51 22.63 radiation 10 10 < th dose independent rect. 6 18
60 22.68 humidity 90 14400 < th dose independent rect. 23 2
64 22.68 radiation 10 10 < th dose independent rect. 6 20
66 22.68 temperature 10 720 > th dose dependent rect. 21 10
67 22.69 wind 9 14400 < th dose independent rect. 7 3
77 22.71 humidity 90 14400 > th dose independent rect. 23 3
86 22.72 humidity 90 14400 > th dose independent rect. 22 9
89 22.72 radiation 20 43200 < th dose independent rect. 18 12
93 22.74 humidity 90 14400 > th dose independent rect. 22 6
102 22.75 temperature 10 720 > th dose dependent rect. 19 14
107 22.76 humidity 80 14400 > th dose dependent rect. 24 1
111 22.77 temperature 15 43200 < th dose dependent rect. 4 1
118 22.79 temperature 15 43200 < th dose independent rect. 5 1
134 22.81 temperature 15 43200 > th dose independent rect. 5 1
143 22.82 humidity 90 14400 < th dose independent sin 9 NA
145 22.82 humidity 50 43200 < th dose independent rect. 16 1
153 22.83 humidity 70 43200 > th dose independent rect. 20 1
160 22.83 radiation 20 14400 > th dose dependent rect. 6 2
169 22.83 radiation 20 10 < th dose dependent rect. 6 8
178 22.84 humidity 50 43200 > th dose independent rect. 16 1
181 22.84 humidity 70 43200 < th dose independent rect. 19 2
193 22.85 wind 9 43200 < th dose independent rect. 18 2
205 22.85 radiation 10 90 < th dose independent rect. 5 13
206 22.85 humidity 50 43200 > th dose independent rect. 18 16
215 22.86 temperature 20 720 < th dose independent rect. 5 2
241 22.87 humidity 50 43200 > th dose independent rect. 20 14
257 22.87 temperature 25 720 < th dose dependent rect. 22 11
261 22.87 humidity 60 43200 < th dose dependent rect. 19 14
264 22.88 wind 9 43200 > th dose independent rect. 18 2
268 22.88 humidity 70 43200 > th dose independent rect. 18 4
269 22.88 humidity 70 43200 < th dose independent rect. 18 4
272 22.88 radiation 20 43200 < th dose independent rect. 1 5
277 22.88 humidity 60 43200 < th dose dependent rect. 16 1
291 22.89 humidity 50 43200 > th dose independent rect. 8 2
313 22.89 wind 7 43200 > th dose dependent rect. 5 1
314 22.89 atmosphere 1005 14400 > th dose dependent rect. 11 1
315 22.89 atmosphere 1005 14400 > th dose dependent rect. 19 1
368 22.90 humidity 70 43200 < th dose dependent rect. 16 5
382 22.90 atmosphere 1005 14400 > th dose dependent rect. 9 11
383 22.91 wind 9 43200 < th dose independent rect. 22 1
387 22.91 humidity 50 43200 < th dose independent rect. 11 1
388 22.91 radiation 30 14400 > th dose independent rect. 7 1
395 22.91 radiation 20 43200 < th dose independent rect. 3 3
397 22.91 humidity 50 43200 < th dose independent rect. 8 4
425 22.91 radiation 40 14400 < th dose independent rect. 18 14
466 22.91 temperature 20 720 > th dose dependent rect. 19 15
467 22.91 temperature 10 270 > th dose dependent rect. 3 19
468 22.92 humidity 90 14400 > th dose independent sin 10 NA
472 22.92 humidity 50 43200 > th dose independent rect. 11 1
474 22.92 radiation 20 43200 < th dose independent rect. 5 1
490 22.92 temperature 15 43200 < th dose independent rect. 23 7
506 22.92 humidity 60 43200 > th dose independent rect. 15 22
507 22.92 temperature 25 720 < th dose dependent sin 9 NA
509 22.92 temperature 20 1440 > th dose dependent rect. 17 1
513 22.92 wind 9 43200 > th dose dependent rect. 24 2
567 22.92 temperature 15 90 > th dose dependent rect. 5 18
569 22.93 wind 7 43200 < th dose independent rect. 5 1
570 22.93 temperature 15 43200 < th dose independent rect. 23 1
571 22.93 humidity 50 43200 < th dose independent rect. 13 1
573 22.93 radiation 40 14400 < th dose independent rect. 7 1
622 22.93 radiation 40 14400 < th dose independent rect. 22 10
638 22.93 humidity 50 43200 > th dose independent rect. 17 19
641 22.93 temperature 20 720 > th dose dependent sin 9 NA
642 22.93 temperature 15 43200 < th dose dependent sin 7 NA
679 22.93 humidity 70 43200 < th dose dependent rect. 11 11
696 22.94 temperature 15 43200 < th dose independent sin 7 NA
697 22.94 temperature 15 43200 < th dose independent sin 5 NA
701 22.94 wind 7 43200 > th dose independent rect. 5 1
702 22.94 temperature 15 43200 > th dose independent rect. 23 1
703 22.94 humidity 50 43200 > th dose independent rect. 13 1
804 22.94 humidity 50 43200 < th dose independent rect. 17 19
811 22.94 humidity 70 43200 < th dose dependent sin 18 NA
813 22.94 humidity 60 43200 < th dose dependent rect. 8 1
814 22.94 humidity 70 43200 < th dose dependent rect. 20 1
896 22.95 temperature 15 43200 > th dose independent sin 7 NA
897 22.95 temperature 15 43200 > th dose independent sin 4 NA
904 22.95 humidity 60 43200 < th dose independent rect. 8 1
942 22.95 radiation 20 14400 < th dose independent rect. 17 9
961 22.95 radiation 1 14400 < th dose independent rect. 18 11