BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0748200 Os01g0748200|J090004F19
         (356 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0748200  Conserved hypothetical protein                      586   e-168
Os02g0230200  Conserved hypothetical protein                      199   2e-51

>Os01g0748200 Conserved hypothetical protein
          Length = 356

 Score =  586 bits (1511), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 298/356 (83%), Positives = 298/356 (83%)

Query: 1   MRGAVHXXXXXXXXXXXXXALITSVPXXXXXXXXXXXXXXXXXYSGTTTTPSRAVTSAGR 60
           MRGAVH             ALITSVP                 YSGTTTTPSRAVTSAGR
Sbjct: 1   MRGAVHPPSRTSSSPPRRSALITSVPAVLALAFLLILAAGVFLYSGTTTTPSRAVTSAGR 60

Query: 61  VNEARGGGHALLSPTVGSIGGARAIWELPAAPARAVLFVAHGCHCRPENFWPPSPRCPGC 120
           VNEARGGGHALLSPTVGSIGGARAIWELPAAPARAVLFVAHGCHCRPENFWPPSPRCPGC
Sbjct: 61  VNEARGGGHALLSPTVGSIGGARAIWELPAAPARAVLFVAHGCHCRPENFWPPSPRCPGC 120

Query: 121 VGLPEDVAITEXXXXXXXXXXXXXXXXECWSMGKEVSAAKRGIRSWATENGLADLPVAAL 180
           VGLPEDVAITE                ECWSMGKEVSAAKRGIRSWATENGLADLPVAAL
Sbjct: 121 VGLPEDVAITERALRRRFAVLALASARECWSMGKEVSAAKRGIRSWATENGLADLPVAAL 180

Query: 181 GASSGGYFVSRLAAEMKLAAVVLMIAEGSFXXXXXXXXXXXXMFLHMPKDQRRAALVERN 240
           GASSGGYFVSRLAAEMKLAAVVLMIAEGSF            MFLHMPKDQRRAALVERN
Sbjct: 181 GASSGGYFVSRLAAEMKLAAVVLMIAEGSFGPGGAPAGYPPAMFLHMPKDQRRAALVERN 240

Query: 241 SKMLRSNGVEVNELRSLELPLTPTMLSDRIPGLNRGLSERIWRVFTEDGFVDERGFMRKD 300
           SKMLRSNGVEVNELRSLELPLTPTMLSDRIPGLNRGLSERIWRVFTEDGFVDERGFMRKD
Sbjct: 241 SKMLRSNGVEVNELRSLELPLTPTMLSDRIPGLNRGLSERIWRVFTEDGFVDERGFMRKD 300

Query: 301 GRATPWKDAVVKRGFWEEVAGWADHIQEELNLAYGYHEMTSLHTDEMFDWIEEHLS 356
           GRATPWKDAVVKRGFWEEVAGWADHIQEELNLAYGYHEMTSLHTDEMFDWIEEHLS
Sbjct: 301 GRATPWKDAVVKRGFWEEVAGWADHIQEELNLAYGYHEMTSLHTDEMFDWIEEHLS 356



>Os02g0230200 Conserved hypothetical protein
          Length = 352

 Score =  199 bits (507), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 114/285 (40%), Positives = 153/285 (53%), Gaps = 10/285 (3%)

Query: 81  GARAIWELPAAPA--RAVLFVAHGCHCRPENFWPPSPRCPGCVGLPEDVAITEXXXXXXX 138
           G   +W+LP      RA +FVA GC  R  +F+  SP CP C GLPE+   T        
Sbjct: 64  GNEVLWQLPPPTTPPRAAVFVAPGCTIRATDFFDASPGCPRCAGLPEERRFTREALRRGY 123

Query: 139 XXXXXXXXXECWSM----GKEVSAAKRGIRSWATE---NGLADLPVAALGASSGGYFVSR 191
                    ECWS+    G E++A +  I  W  E   N LA LP+  +GASSGGYF+S 
Sbjct: 124 AVLAVSSRAECWSLDTGDGGELAAVESIIEWWVKERHPNQLAGLPLVGIGASSGGYFLSA 183

Query: 192 LAAEMKLAAVVLMIAEGSFXXXXXXXXXXX-XMFLHMPKDQRRAALVERNSKMLRSNGVE 250
           LAA ++ ++V +MIAEG F             +F+ MPKD  RA  V  +   LR + V 
Sbjct: 184 LAARVRFSSVAIMIAEGVFATMEEIPARYPPALFVQMPKDGERAREVAASMGKLRGSRVS 243

Query: 251 VNELRSLELPLTPTMLSDRIPGLNRGLSERIWRVFTEDGFVDERGFMRKDGRATPWKDAV 310
           V E++  E  ++   L+ RIPGL   +++ +  V    GFVDE+GF++ DGR+TPWK A 
Sbjct: 244 VREIQCGEFAVSAQFLAARIPGLTLAVADGLVDVLRRKGFVDEKGFLKNDGRSTPWKKAA 303

Query: 311 VKRGFWEEVAGWADHIQEELNLAYGYHEMTSLHTDEMFDWIEEHL 355
            +     E      H+ EELNLAY YHE TSL   E+FDW E H+
Sbjct: 304 EEAKILPEEFRLERHVTEELNLAYAYHEFTSLKNGEIFDWFESHM 348



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.134    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,222,871
Number of extensions: 469931
Number of successful extensions: 1245
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1241
Number of HSP's successfully gapped: 2
Length of query: 356
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 254
Effective length of database: 11,709,973
Effective search space: 2974333142
Effective search space used: 2974333142
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 156 (64.7 bits)