BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0738600 Os01g0738600|AK073479
(628 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0738600 ENTH/VHS domain containing protein 1129 0.0
Os04g0599900 Similar to ENTH1 protein (Fragment) 398 e-111
Os02g0806600 Epsin, N-terminal domain containing protein 219 3e-57
>Os01g0738600 ENTH/VHS domain containing protein
Length = 628
Score = 1129 bits (2920), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 566/628 (90%), Positives = 566/628 (90%)
Query: 1 MDFRKVLDQTVREIRREVNLKVLKVPEIEQKVLDATSDEPWGPHGSDLADIARATKSYGD 60
MDFRKVLDQTVREIRREVNLKVLKVPEIEQKVLDATSDEPWGPHGSDLADIARATKSYGD
Sbjct: 1 MDFRKVLDQTVREIRREVNLKVLKVPEIEQKVLDATSDEPWGPHGSDLADIARATKSYGD 60
Query: 61 SEIIMNVLWQRLGNTLANWRHVYKALAVIEYLLANGTERAADGIVDNSSRIAKLTRFEYL 120
SEIIMNVLWQRLGNTLANWRHVYKALAVIEYLLANGTERAADGIVDNSSRIAKLTRFEYL
Sbjct: 61 SEIIMNVLWQRLGNTLANWRHVYKALAVIEYLLANGTERAADGIVDNSSRIAKLTRFEYL 120
Query: 121 EPNGKDVGLNVRKKAEAVLAILDDREKLQEVREKAAVTRDKYFGLSSTGITHKXXXXXXX 180
EPNGKDVGLNVRKKAEAVLAILDDREKLQEVREKAAVTRDKYFGLSSTGITHK
Sbjct: 121 EPNGKDVGLNVRKKAEAVLAILDDREKLQEVREKAAVTRDKYFGLSSTGITHKSSAASFG 180
Query: 181 XXXXXXXXXXXXXXXXREVGSFKDIHTGTEWKKNKKETVSNYSSNREGSKEITNSATSYK 240
REVGSFKDIHTGTEWKKNKKETVSNYSSNREGSKEITNSATSYK
Sbjct: 181 SGSYSSGSHYGSTGGSREVGSFKDIHTGTEWKKNKKETVSNYSSNREGSKEITNSATSYK 240
Query: 241 SKKSERHGRRNQNSLTLHSKLSANISTTSEAPSSKKGENEDDDDFNPRGFXXXXXXXXXR 300
SKKSERHGRRNQNSLTLHSKLSANISTTSEAPSSKKGENEDDDDFNPRGF R
Sbjct: 241 SKKSERHGRRNQNSLTLHSKLSANISTTSEAPSSKKGENEDDDDFNPRGFSTSTGTGTTR 300
Query: 301 SNHLDLFGPSLMDDLVDXXXXXXXXXXXXXXXXVPEVDLFADAAFQSANAPLEAATVSHT 360
SNHLDLFGPSLMDDLVD VPEVDLFADAAFQSANAPLEAATVSHT
Sbjct: 301 SNHLDLFGPSLMDDLVDSTTSTSTATPNVSTPAVPEVDLFADAAFQSANAPLEAATVSHT 360
Query: 361 QDKIDLFAGRLSSADSFTSDTEFSVRGSPNKSSEKKMSSVVHPSTSAFDPFKQSFATSFP 420
QDKIDLFAGRLSSADSFTSDTEFSVRGSPNKSSEKKMSSVVHPSTSAFDPFKQSFATSFP
Sbjct: 361 QDKIDLFAGRLSSADSFTSDTEFSVRGSPNKSSEKKMSSVVHPSTSAFDPFKQSFATSFP 420
Query: 421 SDSEFSVHDPTSKSSQGKTPTPEHSSTAAFDPFAAIPLKSFDGSESFGTFSSNTASNITE 480
SDSEFSVHDPTSKSSQGKTPTPEHSSTAAFDPFAAIPLKSFDGSESFGTFSSNTASNITE
Sbjct: 421 SDSEFSVHDPTSKSSQGKTPTPEHSSTAAFDPFAAIPLKSFDGSESFGTFSSNTASNITE 480
Query: 481 LPRDSSGGPKSSDHGPLEDANFDAFTSHLGSSTTSATESMNKPIKKLGQDSMSASKSVAK 540
LPRDSSGGPKSSDHGPLEDANFDAFTSHLGSSTTSATESMNKPIKKLGQDSMSASKSVAK
Sbjct: 481 LPRDSSGGPKSSDHGPLEDANFDAFTSHLGSSTTSATESMNKPIKKLGQDSMSASKSVAK 540
Query: 541 KETFQVKSGIWADSLSRGLIDLNITSSQKKVDLSDVGIVGPLSGGSEDKGPGATMGTAPG 600
KETFQVKSGIWADSLSRGLIDLNITSSQKKVDLSDVGIVGPLSGGSEDKGPGATMGTAPG
Sbjct: 541 KETFQVKSGIWADSLSRGLIDLNITSSQKKVDLSDVGIVGPLSGGSEDKGPGATMGTAPG 600
Query: 601 LVXXXXXXXXXXXXXXGHFQHQQFGSFK 628
LV GHFQHQQFGSFK
Sbjct: 601 LVSSSFPSKTETSSGSGHFQHQQFGSFK 628
>Os04g0599900 Similar to ENTH1 protein (Fragment)
Length = 594
Score = 398 bits (1023), Expect = e-111, Method: Compositional matrix adjust.
Identities = 255/637 (40%), Positives = 336/637 (52%), Gaps = 118/637 (18%)
Query: 1 MDFRKVLDQTVREIRREVNLKVLKVPEIEQKVLDATSDEPWGPHGSDLADIARATKSYGD 60
MDF KV DQ VREI+REVNLKVLKVPE+EQKVLDATSDEPWGPHG+ L++++ ATK + +
Sbjct: 1 MDFVKVFDQAVREIKREVNLKVLKVPELEQKVLDATSDEPWGPHGTTLSELSHATKKFAE 60
Query: 61 SEIIMNVLWQRLGNTLANWRHVYKALAVIEYLLANGTERAADGIVDNSSRIAKLTRFEYL 120
+++M+VLW RL + WRHVYKAL +IEYL+ANG+ERA D I+D+ S+I+ L+ FEY+
Sbjct: 61 CQMVMSVLWTRLSERGSKWRHVYKALTIIEYLIANGSERAVDDILDHYSKISVLSSFEYV 120
Query: 121 EPNGKDVGLNVRKKAEAVLAILDDREKLQEVREKAAVTRDKYFGLSSTGITHKXXXXXXX 180
EPNGKD G+NVRKK E +L +++D+EK++ VREKAA RDKY GLSSTGIT+K
Sbjct: 121 EPNGKDAGINVRKKVETILGLINDKEKIKSVREKAASNRDKYVGLSSTGITYK------- 173
Query: 181 XXXXXXXXXXXXXXXXREVGSFKDIHTGTEWKKNKKETVSNYSSNREGSKEITNSATSYK 240
GSF G + + ++ KE S+ SY
Sbjct: 174 ---SSSASFGSNYSSGERYGSFSGTREGDSYGDSYRD------------KEPVKSSPSYT 218
Query: 241 SKKSERHGRRNQNSLTLHSKLSANISTTSEAPSSKKGENEDDDDFNPRGFXXXXXXXXXR 300
S++ G R + + N + S S+ KG +D DDF+PRG
Sbjct: 219 G--SQKSGSRIKKDVNRR-----NEDSPSSLKSNAKGNEDDFDDFDPRG-SSSNGAANTN 270
Query: 301 SNHLDLFGPSLMDDLVDXXXXXXXXXXXXXXXXVPEVDLFADAAFQSANAPLEAATVSHT 360
++ +DLF P+L+DD +D +VDLFADA FQSA E A S
Sbjct: 271 TSGVDLFAPNLLDDFIDVPAAATHETNDSADA---QVDLFADADFQSAIPSTETAAGSDV 327
Query: 361 QDKIDLFAGRLSSADSFTSDTEFSVRGSPNKSSEKKMSSVVHPSTSAFDPFKQSFATSFP 420
Q +DLFA E+ + P + F P
Sbjct: 328 QGNVDLFA-------------------------EQPAFTAAFPPQTGFIP---------- 352
Query: 421 SDSEFSVHDPTSKSSQGKTPTPEHSSTAAFDPFAAIPLKSFDGSESFGTFSSNTASNITE 480
P+S +S+ T T ++++ FDPF AIP+ SFDGS+ FG F+S+ S+
Sbjct: 353 --------PPSSGTSEANTSTSKNTTPEPFDPFGAIPINSFDGSDPFGAFNSDVGSSSIP 404
Query: 481 LPRDSSGG--------PK-SSDHG-------------------------PLED-----AN 501
P SS G P+ +SD G PL D ++
Sbjct: 405 PPTQSSVGNISTPSQNPQAASDFGGFVSSTVETAAKDPFDFSSSNLGKTPLADPKADASD 464
Query: 502 FDAFTSHLGSSTTSATE-SMNKPIKKLGQDSMSASKSVAKKETFQVKSGIWADSLSRGLI 560
F AF SH + S++ + Q ++A KS KKE FQVKSGIWADSLSRGLI
Sbjct: 465 FGAFVSHSEEVAKDPFDLSLSTSSGRTNQAPLAAPKSDTKKENFQVKSGIWADSLSRGLI 524
Query: 561 DLNITSSQKKVDLSDVGIVGPLSGGSEDKG-PGATMG 596
DLNIT KKV+L+DVGIVG L GS+DK P TMG
Sbjct: 525 DLNIT-GPKKVNLADVGIVGGLDDGSDDKALPSWTMG 560
>Os02g0806600 Epsin, N-terminal domain containing protein
Length = 945
Score = 219 bits (559), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 93/171 (54%), Positives = 140/171 (81%)
Query: 3 FRKVLDQTVREIRREVNLKVLKVPEIEQKVLDATSDEPWGPHGSDLADIARATKSYGDSE 62
+KV DQTVR+++REVN KVLKVP IEQK+LDATS+EPWGPHGS LA+IA+AT++Y + +
Sbjct: 1 MKKVFDQTVRDLKREVNKKVLKVPGIEQKILDATSNEPWGPHGSLLAEIAQATQNYHEYQ 60
Query: 63 IIMNVLWQRLGNTLANWRHVYKALAVIEYLLANGTERAADGIVDNSSRIAKLTRFEYLEP 122
++MNV+W+R+ +T NWRHVYK L V++YL+A+GTER D I ++S +I+ L F+Y++
Sbjct: 61 MVMNVVWKRINDTGKNWRHVYKGLIVLDYLVAHGTERVIDDIREHSYQISTLADFQYIDS 120
Query: 123 NGKDVGLNVRKKAEAVLAILDDREKLQEVREKAAVTRDKYFGLSSTGITHK 173
+G+D G NVR+K+++++++++D+E++QEVR+KA TRDKY +T TH+
Sbjct: 121 SGRDQGSNVRRKSQSLVSLVNDKERIQEVRQKALATRDKYRSAFATSGTHR 171
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.309 0.126 0.351
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 18,712,061
Number of extensions: 730393
Number of successful extensions: 2246
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 2235
Number of HSP's successfully gapped: 3
Length of query: 628
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 521
Effective length of database: 11,448,903
Effective search space: 5964878463
Effective search space used: 5964878463
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 159 (65.9 bits)