BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0729100 Os01g0729100|AK068733
         (318 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0729100  Protein of unknown function DUF92, transmembra...   462   e-130

>Os01g0729100 Protein of unknown function DUF92, transmembrane family protein
          Length = 318

 Score =  462 bits (1188), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 237/254 (93%), Positives = 237/254 (93%)

Query: 65  FLASPPTWRSAAVSNLAIFVAGSPVXXXXXXXXXXXXXXXXXTLTWRAFGPKGLVLVASY 124
           FLASPPTWRSAAVSNLAIFVAGSPV                 TLTWRAFGPKGLVLVASY
Sbjct: 65  FLASPPTWRSAAVSNLAIFVAGSPVLLSGLSASGFAAAYLLGTLTWRAFGPKGLVLVASY 124

Query: 125 FVLGTAATKLKIKQKEALGVAEKRGGRRGTGSVIGSSAAGCVCALLSIYNVGSAALAELW 184
           FVLGTAATKLKIKQKEALGVAEKRGGRRGTGSVIGSSAAGCVCALLSIYNVGSAALAELW
Sbjct: 125 FVLGTAATKLKIKQKEALGVAEKRGGRRGTGSVIGSSAAGCVCALLSIYNVGSAALAELW 184

Query: 185 RLGFVASYCTKLSDTVSSEIGKAYGRTTYLVTTLKVVPRGTEGAISIEGTLAGILASIIL 244
           RLGFVASYCTKLSDTVSSEIGKAYGRTTYLVTTLKVVPRGTEGAISIEGTLAGILASIIL
Sbjct: 185 RLGFVASYCTKLSDTVSSEIGKAYGRTTYLVTTLKVVPRGTEGAISIEGTLAGILASIIL 244

Query: 245 ASVGYLLGQVNVSQGAVCVLASQIANFCESYIGATLQDKEGFEWLTNDVVNVLNISTGGI 304
           ASVGYLLGQVNVSQGAVCVLASQIANFCESYIGATLQDKEGFEWLTNDVVNVLNISTGGI
Sbjct: 245 ASVGYLLGQVNVSQGAVCVLASQIANFCESYIGATLQDKEGFEWLTNDVVNVLNISTGGI 304

Query: 305 LAVLMQQLLVSWRS 318
           LAVLMQQLLVSWRS
Sbjct: 305 LAVLMQQLLVSWRS 318



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.133    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,462,861
Number of extensions: 255967
Number of successful extensions: 821
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 820
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 217
Effective length of database: 11,762,187
Effective search space: 2552394579
Effective search space used: 2552394579
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 156 (64.7 bits)