Os01g0729100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF92, transmembrane family protein.
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Os01g0729100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF92, transmembrane family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 60.69 | 0.366 | 9.7 | 0.378 | 0.697 | -1.1 | -0.0964 | 0.862 | -0.243 | 2.82 | 58 | 1338 | -- | -- |
| 61.06 | 0.364 | 9.71 | 0.342 | 0.699 | -0.927 | -0.0409 | -- | -0.237 | 2.8 | 59 | 1297 | -- | -- |
| 60.65 | 0.363 | 9.7 | 0.391 | 0.704 | -1.18 | -- | 1.02 | -0.234 | 2.76 | 57.12 | 1265 | -- | -- |
| 61.06 | 0.364 | 9.71 | 0.353 | 0.704 | -0.966 | -- | -- | -0.231 | 2.76 | 58.3 | 1241 | -- | -- |
| 87.8 | 0.436 | 9.7 | 0.355 | -- | -0.786 | -- | 0.511 | -0.207 | -- | 59 | 1523 | -- | -- |
| 72.44 | 0.399 | 9.68 | 0.18 | 0.629 | -- | -0.22 | -- | -0.129 | 2.97 | -- | -- | -- | -- |
| 72.6 | 0.399 | 9.68 | 0.185 | 0.629 | -- | -- | -- | -0.127 | 2.98 | -- | -- | -- | -- |
| 77.15 | 0.409 | 9.68 | 0.208 | -- | -0.78 | -- | -- | -0.11 | -- | 145.8 | 141 | -- | -- |
| 64.03 | 0.373 | 9.71 | -- | 0.698 | -0.805 | -- | -- | -0.258 | 2.82 | 59.33 | 1278 | -- | -- |
| 95.31 | 0.456 | 9.68 | 0.212 | -- | -- | -- | -- | -0.111 | -- | -- | -- | -- | -- |
| 73.5 | 0.401 | 9.69 | -- | 0.632 | -- | -- | -- | -0.148 | 2.98 | -- | -- | -- | -- |
| 78.29 | 0.412 | 9.69 | -- | -- | -0.781 | -- | -- | -0.133 | -- | 98.04 | 141 | -- | -- |
| 96.49 | 0.458 | 9.69 | -- | -- | -- | -- | -- | -0.135 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 59.43 | humidity | 60 | 1440 | < th | dose independent | rect. | 16 | 19 |
| 3 | 59.64 | humidity | 60 | 1440 | < th | dose dependent | rect. | 15 | 21 |
| 4 | 59.67 | humidity | 60 | 1440 | > th | dose independent | rect. | 15 | 20 |
| 10 | 60.01 | humidity | 60 | 1440 | < th | dose independent | sin | 11 | NA |
| 13 | 60.14 | humidity | 60 | 1440 | > th | dose independent | sin | 11 | NA |
| 17 | 60.35 | humidity | 60 | 1440 | < th | dose dependent | sin | 11 | NA |
| 37 | 60.85 | humidity | 60 | 1440 | > th | dose independent | rect. | 15 | 4 |
| 41 | 60.92 | humidity | 60 | 1440 | > th | dose independent | rect. | 15 | 9 |
| 42 | 60.92 | humidity | 60 | 1440 | > th | dose independent | rect. | 15 | 14 |
| 47 | 60.93 | humidity | 60 | 1440 | > th | dose independent | rect. | 15 | 12 |
| 49 | 60.94 | humidity | 60 | 1440 | < th | dose independent | rect. | 15 | 4 |
| 57 | 60.99 | wind | 7 | 4320 | < th | dose independent | rect. | 15 | 4 |
| 79 | 61.08 | humidity | 70 | 1440 | < th | dose dependent | rect. | 15 | 4 |
| 80 | 61.09 | humidity | 70 | 1440 | < th | dose dependent | rect. | 16 | 2 |
| 85 | 61.12 | wind | 5 | 4320 | > th | dose dependent | rect. | 15 | 5 |
| 134 | 61.24 | wind | 7 | 4320 | > th | dose independent | rect. | 15 | 4 |
| 165 | 61.34 | wind | 7 | 4320 | > th | dose independent | rect. | 15 | 6 |
| 263 | 61.52 | humidity | 80 | 14400 | < th | dose independent | rect. | 22 | 1 |
| 264 | 61.52 | radiation | 1 | 1440 | < th | dose independent | rect. | 12 | 2 |
| 268 | 61.52 | radiation | 1 | 1440 | < th | dose dependent | rect. | 12 | 2 |
| 280 | 61.55 | humidity | 60 | 1440 | < th | dose dependent | rect. | 8 | 11 |
| 300 | 61.58 | humidity | 60 | 1440 | < th | dose dependent | no | NA | NA |
| 397 | 61.61 | radiation | 1 | 1440 | > th | dose independent | rect. | 12 | 2 |
| 434 | 61.73 | radiation | 1 | 1440 | > th | dose independent | rect. | 10 | 4 |
| 454 | 61.77 | humidity | 50 | 1440 | > th | dose independent | rect. | 2 | 15 |
| 473 | 61.80 | humidity | 50 | 1440 | > th | dose independent | rect. | 4 | 13 |
| 479 | 61.82 | humidity | 50 | 1440 | > th | dose independent | rect. | 6 | 11 |
| 480 | 61.82 | humidity | 50 | 1440 | > th | dose independent | rect. | 21 | 20 |
| 483 | 61.83 | humidity | 50 | 1440 | > th | dose independent | rect. | 8 | 9 |
| 485 | 61.83 | humidity | 50 | 1440 | > th | dose independent | rect. | 23 | 18 |
| 489 | 61.84 | wind | 9 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 553 | 61.98 | atmosphere | 1005 | 720 | > th | dose independent | rect. | 18 | 9 |
| 610 | 62.14 | humidity | 50 | 1440 | > th | dose independent | rect. | 2 | 22 |
| 639 | 62.16 | humidity | 50 | 1440 | > th | dose independent | rect. | 4 | 20 |
| 666 | 62.17 | humidity | 50 | 1440 | > th | dose independent | rect. | 6 | 18 |
| 675 | 62.17 | humidity | 50 | 1440 | > th | dose independent | rect. | 6 | 23 |
| 676 | 62.17 | humidity | 50 | 1440 | > th | dose independent | rect. | 8 | 23 |
| 681 | 62.18 | humidity | 50 | 1440 | > th | dose independent | rect. | 6 | 16 |
| 682 | 62.18 | humidity | 50 | 1440 | > th | dose independent | rect. | 8 | 16 |
| 691 | 62.18 | humidity | 50 | 1440 | > th | dose independent | rect. | 4 | 23 |
| 694 | 62.19 | humidity | 50 | 1440 | > th | dose independent | no | NA | NA |
| 698 | 62.19 | humidity | 50 | 1440 | > th | dose independent | rect. | 8 | 14 |
| 706 | 62.19 | humidity | 50 | 1440 | > th | dose independent | rect. | 6 | 21 |
| 707 | 62.19 | humidity | 50 | 1440 | > th | dose independent | rect. | 8 | 21 |
| 723 | 62.20 | humidity | 50 | 1440 | > th | dose independent | rect. | 8 | 19 |
| 736 | 62.21 | wind | 9 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 740 | 62.21 | wind | 7 | 4320 | < th | dose independent | rect. | 15 | 10 |
| 753 | 62.22 | wind | 7 | 43200 | > th | dose independent | rect. | 16 | 2 |
| 767 | 62.23 | wind | 7 | 43200 | < th | dose independent | rect. | 16 | 2 |
| 782 | 62.25 | humidity | 50 | 1440 | > th | dose independent | sin | 18 | NA |
| 836 | 62.32 | humidity | 50 | 1440 | < th | dose independent | rect. | 10 | 7 |
| 890 | 62.38 | wind | 7 | 4320 | > th | dose independent | rect. | 15 | 10 |
| 918 | 62.40 | atmosphere | 1005 | 720 | > th | dose independent | rect. | 21 | 4 |