BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0714100 Os01g0714100|AK060399
         (395 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0714100  Conserved hypothetical protein                      769   0.0  
Os09g0553900  Conserved hypothetical protein                       75   8e-14

>Os01g0714100 Conserved hypothetical protein
          Length = 395

 Score =  769 bits (1985), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/395 (95%), Positives = 377/395 (95%)

Query: 1   MMQQIAWEASPALESSERYDLLDNHTMDALAGGIGNATFGKSKKGRCTDLSSSLGRESTS 60
           MMQQIAWEASPALESSERYDLLDNHTMDALAGGIGNATFGKSKKGRCTDLSSSLGRESTS
Sbjct: 1   MMQQIAWEASPALESSERYDLLDNHTMDALAGGIGNATFGKSKKGRCTDLSSSLGRESTS 60

Query: 61  EYVSLEDLAPLAMEKIEALSIEGLRIQSGMSEEDAPSNISAQPIGEFSSLQGKCAGNTLS 120
           EYVSLEDLAPLAMEKIEALSIEGLRIQSGMSEEDAPSNISAQPIGEFSSLQGKCAGNTLS
Sbjct: 61  EYVSLEDLAPLAMEKIEALSIEGLRIQSGMSEEDAPSNISAQPIGEFSSLQGKCAGNTLS 120

Query: 121 LGLEGTAGLQLLDVKQSGGDVDGLMGLSITLDEWMRLDSGIVDEDEQFTDRTSKILAAHH 180
           LGLEGTAGLQLLDVKQSGGDVDGLMGLSITLDEWMRLDSGIVDEDEQFTDRTSKILAAHH
Sbjct: 121 LGLEGTAGLQLLDVKQSGGDVDGLMGLSITLDEWMRLDSGIVDEDEQFTDRTSKILAAHH 180

Query: 181 AKSMELVAENQNVDKKNRRSGRRWGLLGNNFTVALMVQLRDPLRNYEPVGTPMLALIQVE 240
           AKSMELVAENQNVDKKNRRSGRRWGLLGNNFTVALMVQLRDPLRNYEPVGTPMLALIQVE
Sbjct: 181 AKSMELVAENQNVDKKNRRSGRRWGLLGNNFTVALMVQLRDPLRNYEPVGTPMLALIQVE 240

Query: 241 RVFVPPKPKIYSTVTDKGNSEHDDEEPKTXXXXXXXXXXXXXXXXXXDSVPQFKVAEVHV 300
           RVFVPPKPKIYSTVTDKGNSEHDDEEPKT                  DSVPQFKVAEVHV
Sbjct: 241 RVFVPPKPKIYSTVTDKGNSEHDDEEPKTEEVLEKALVKEEKIEEEEDSVPQFKVAEVHV 300

Query: 301 AGFKSEPEKTKSWGNQTQQQSGSRWLLAAGMGKGNKHPLMKSKAIAKPTKEAAGQSEDTL 360
           AGFKSEPEKTKSWGNQTQQQSGSRWLLAAGMGKGNKHPLMKSKAIAKPTKEAAGQSEDTL
Sbjct: 301 AGFKSEPEKTKSWGNQTQQQSGSRWLLAAGMGKGNKHPLMKSKAIAKPTKEAAGQSEDTL 360

Query: 361 WSISSRVHGAGTRWGELAGPKRNPNILLQKEKRFR 395
           WSISSRVHGAGTRWGELAGPKRNPNILLQKEKRFR
Sbjct: 361 WSISSRVHGAGTRWGELAGPKRNPNILLQKEKRFR 395



>Os09g0553900 Conserved hypothetical protein
          Length = 883

 Score = 75.1 bits (183), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 60/188 (31%), Positives = 83/188 (44%), Gaps = 59/188 (31%)

Query: 204 WGLL---GNNFTVALMVQLRDPLRNYEPVGTPMLALIQVERVFVPPKPKIYSTVTDKGNS 260
           W L     +  T+ L+ QLRDPLR YE VG P + +IQ  R+               GN 
Sbjct: 745 WALACVGADTVTMLLVAQLRDPLRRYEAVGAPSIVIIQAVRI--------------AGND 790

Query: 261 EHDDEEPKTXXXXXXXXXXXXXXXXXXDSVPQFKVAEVHVAGFK-SEPEKTKSWGNQTQQ 319
             DD+EPK                        FKVA +HV G +    ++   W  + Q+
Sbjct: 791 --DDDEPK------------------------FKVANMHVGGLRLKSADRRNVWDGEKQR 824

Query: 320 QSGSRWLLAAGMGKGNKHPLMKSKAIAKPTKEAAGQS-EDTLWSISSRVHGAGTRWGELA 378
            +   WL+A G+GK  +    K +     T  AAG+S  D LWS+SSRV      W +  
Sbjct: 825 LTAMHWLVAYGLGKAGR----KGR-----TAAAAGKSGHDVLWSMSSRVM--ADMWLK-- 871

Query: 379 GPKRNPNI 386
            P RNP++
Sbjct: 872 -PLRNPDV 878



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.311    0.129    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,450,102
Number of extensions: 550237
Number of successful extensions: 1015
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1012
Number of HSP's successfully gapped: 2
Length of query: 395
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 292
Effective length of database: 11,657,759
Effective search space: 3404065628
Effective search space used: 3404065628
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 157 (65.1 bits)