BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0706700 Os01g0706700|AK072738
         (665 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0706700  Protein of unknown function DUF590 family protein  1269   0.0  

>Os01g0706700 Protein of unknown function DUF590 family protein
          Length = 665

 Score = 1269 bits (3285), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 620/648 (95%), Positives = 620/648 (95%)

Query: 18  TGFEVGIVVPKLYRGAAAGCGEVENCVARLVRELEDVGLIVERVRGVPAEFIKLSAPMGT 77
           TGFEVGIVVPKLYRGAAAGCGEVENCVARLVRELEDVGLIVERVRGVPAEFIKLSAPMGT
Sbjct: 18  TGFEVGIVVPKLYRGAAAGCGEVENCVARLVRELEDVGLIVERVRGVPAEFIKLSAPMGT 77

Query: 78  LGRVAAEMNMKKLTYIGMELQFEWDQVGAFVRQPDGSLFSWRERFACFRHLIYSIVNKTD 137
           LGRVAAEMNMKKLTYIGMELQFEWDQVGAFVRQPDGSLFSWRERFACFRHLIYSIVNKTD
Sbjct: 78  LGRVAAEMNMKKLTYIGMELQFEWDQVGAFVRQPDGSLFSWRERFACFRHLIYSIVNKTD 137

Query: 138 SDITLSFDDKEFHWTQNESLLTRLEDEGIVKLVFPLHDEIKRKQLLRSWALKWFDFTWQP 197
           SDITLSFDDKEFHWTQNESLLTRLEDEGIVKLVFPLHDEIKRKQLLRSWALKWFDFTWQP
Sbjct: 138 SDITLSFDDKEFHWTQNESLLTRLEDEGIVKLVFPLHDEIKRKQLLRSWALKWFDFTWQP 197

Query: 198 IDEIYSYFGTKIAIYFSFLGMYTRWLFFPAVFGLATQLIDFGSLQWLVLPXXXXXXXXXX 257
           IDEIYSYFGTKIAIYFSFLGMYTRWLFFPAVFGLATQLIDFGSLQWLVLP          
Sbjct: 198 IDEIYSYFGTKIAIYFSFLGMYTRWLFFPAVFGLATQLIDFGSLQWLVLPAFFFFVISWA 257

Query: 258 XXXLQFWKRKNSAVLARWGINYSFSEYKTMGNELDPLSFSMADDNVQQRKFGAPKEKSIV 317
              LQFWKRKNSAVLARWGINYSFSEYKTMGNELDPLSFSMADDNVQQRKFGAPKEKSIV
Sbjct: 258 VFFLQFWKRKNSAVLARWGINYSFSEYKTMGNELDPLSFSMADDNVQQRKFGAPKEKSIV 317

Query: 318 QRNEWFGVLLRIRNNAIIVLAIICLQLPFELAYAHLYAITKTEALRYVLTAVYLAAIQYY 377
           QRNEWFGVLLRIRNNAIIVLAIICLQLPFELAYAHLYAITKTEALRYVLTAVYLAAIQYY
Sbjct: 318 QRNEWFGVLLRIRNNAIIVLAIICLQLPFELAYAHLYAITKTEALRYVLTAVYLAAIQYY 377

Query: 378 TRIGGKVSVTLIKYENNQGEQSSADSLVYKVFGLYFMQSYIGLFYHASLHRNIMALRQVL 437
           TRIGGKVSVTLIKYENNQGEQSSADSLVYKVFGLYFMQSYIGLFYHASLHRNIMALRQVL
Sbjct: 378 TRIGGKVSVTLIKYENNQGEQSSADSLVYKVFGLYFMQSYIGLFYHASLHRNIMALRQVL 437

Query: 438 IKRLIVSQVLENLIENSIPYLNYSYKKYRAVHKKKHEKESPAGKSVRLSTRVEKEYLKPS 497
           IKRLIVSQVLENLIENSIPYLNYSYKKYRAVHKKKHEKESPAGKSVRLSTRVEKEYLKPS
Sbjct: 438 IKRLIVSQVLENLIENSIPYLNYSYKKYRAVHKKKHEKESPAGKSVRLSTRVEKEYLKPS 497

Query: 498 YTASIXXXXXXXXXXXXXXXTLQFGMIMMFACAFPSIFCFAALNNVTEIRADALKLLVML 557
           YTASI               TLQFGMIMMFACAFPSIFCFAALNNVTEIRADALKLLVML
Sbjct: 498 YTASIGEELEDGLFDDFLELTLQFGMIMMFACAFPSIFCFAALNNVTEIRADALKLLVML 557

Query: 558 KRPAPRDAATIGAWLNIFQFLVVMAICTNCLLLVCLYDEEGKWKIEPGLAAILIMEHALF 617
           KRPAPRDAATIGAWLNIFQFLVVMAICTNCLLLVCLYDEEGKWKIEPGLAAILIMEHALF
Sbjct: 558 KRPAPRDAATIGAWLNIFQFLVVMAICTNCLLLVCLYDEEGKWKIEPGLAAILIMEHALF 617

Query: 618 LIKFGFSHFVPEEPAWVKANRGRYVAQAQNVCSKQLLRSIAKLDAKLE 665
           LIKFGFSHFVPEEPAWVKANRGRYVAQAQNVCSKQLLRSIAKLDAKLE
Sbjct: 618 LIKFGFSHFVPEEPAWVKANRGRYVAQAQNVCSKQLLRSIAKLDAKLE 665



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.326    0.139    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 19,505,160
Number of extensions: 748886
Number of successful extensions: 1995
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1994
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 558
Effective length of database: 11,448,903
Effective search space: 6388487874
Effective search space used: 6388487874
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 159 (65.9 bits)