BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0705200 Os01g0705200|AK064074
         (215 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0705200  Late embryogenesis abundant protein repeat con...   234   3e-62
Os05g0542500  LEA-like protein                                     65   2e-11

>Os01g0705200 Late embryogenesis abundant protein repeat containing protein
          Length = 215

 Score =  234 bits (597), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 136/215 (63%), Positives = 136/215 (63%)

Query: 1   MASQQERASYHAGETKARAEEKTGRMMGTAQEKAREAKDTASDXXXXXXXXXXXXXXXXX 60
           MASQQERASYHAGETKARAEEKTGRMMGTAQEKAREAKDTASD                 
Sbjct: 1   MASQQERASYHAGETKARAEEKTGRMMGTAQEKAREAKDTASDAAGRAMGRGHGAKEATK 60

Query: 61  XXXXXXXXXXXXXXYEAKDAASDATGRAMDKGRGAAGXXXXXXXXXXXXXXXXXXXXXXX 120
                         YEAKDAASDATGRAMDKGRGAAG                       
Sbjct: 61  EKAYETKDATKEKAYEAKDAASDATGRAMDKGRGAAGATRDKAYDAKDRAADTAQSAADR 120

Query: 121 XXXGAGQTGSYIXXXXXXXXXXXXXXXXXXXXXXIAGKDKTGAVLQQAGEQVKSVAVGAK 180
              GAGQTGSYI                      IAGKDKTGAVLQQAGEQVKSVAVGAK
Sbjct: 121 ARDGAGQTGSYIGQTAEAAKQKAAGAAQYAKETAIAGKDKTGAVLQQAGEQVKSVAVGAK 180

Query: 181 DAVMYTLGMSGDNKNNAAAGKDTSTYKPGTGSDYQ 215
           DAVMYTLGMSGDNKNNAAAGKDTSTYKPGTGSDYQ
Sbjct: 181 DAVMYTLGMSGDNKNNAAAGKDTSTYKPGTGSDYQ 215



>Os05g0542500 LEA-like protein
          Length = 200

 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 31/39 (79%), Positives = 33/39 (84%)

Query: 155 IAGKDKTGAVLQQAGEQVKSVAVGAKDAVMYTLGMSGDN 193
           IAGKDKTG+VLQQA EQVKS  VGAKDAVM TLGM+ D 
Sbjct: 137 IAGKDKTGSVLQQASEQVKSTVVGAKDAVMSTLGMTEDE 175



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.303    0.119    0.315 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,094,411
Number of extensions: 102910
Number of successful extensions: 174
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 166
Number of HSP's successfully gapped: 2
Length of query: 215
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 118
Effective length of database: 11,971,043
Effective search space: 1412583074
Effective search space used: 1412583074
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 154 (63.9 bits)