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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0705200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Late embryogenesis abundant protein repeat containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.33 (0.065) R2 : 0.241
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.81 (0.185) R2dC : 0.191 R2C : 0.0385
β3 : 1.18 (0.126) R2dE : 0.174 R2E : 0.0279
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.509 (0.137) R2dN8 : 0.0303 R2N8 : 0.0179
σ : 1.23
deviance : 685.47
__
_____
C
peak time of C : 6.08
E
wheather : humidity
threshold : 79.75
memory length : 10
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
665.53 1.21 4.32 0.673 1.8 1.17 0.166 1.32 -0.432 6.11 80 12 -- --
675.27 1.22 4.32 0.618 1.8 1.16 -0.304 -- -0.441 6.11 79.78 10 -- --
665.71 1.2 4.32 0.675 1.8 1.16 -- 1.31 -0.432 6.12 79.99 13 -- --
675.49 1.22 4.32 0.617 1.79 1.15 -- -- -0.44 6.15 79.75 10 -- --
808.83 1.33 4.34 0.729 -- 0.692 -- 1.29 -0.382 -- 79.99 13 -- --
740.72 1.28 4.31 0.694 1.52 -- 0.76 -- -0.393 8.95 -- -- -- --
742.67 1.28 4.31 0.719 1.52 -- -- -- -0.393 8.9 -- -- -- --
818.16 1.34 4.35 0.687 -- 0.703 -- -- -0.393 -- 80 10 -- --
685.47 1.23 4.33 -- 1.81 1.18 -- -- -0.509 6.08 79.75 10 -- --
874.6 1.38 4.35 0.719 -- -- -- -- -0.382 -- -- -- -- --
756.3 1.29 4.32 -- 1.52 -- -- -- -0.473 8.86 -- -- -- --
830.61 1.35 4.37 -- -- 0.71 -- -- -0.469 -- 80 10 -- --
888.24 1.39 4.36 -- -- -- -- -- -0.462 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 656.36 humidity 80 10 < th dose independent rect. 13 23
3 658.57 temperature 20 720 < th dose independent rect. 16 9
5 658.58 temperature 20 720 < th dose independent sin 17 NA
11 658.83 temperature 20 720 > th dose independent rect. 18 8
15 659.50 temperature 20 720 > th dose independent sin 21 NA
27 660.73 temperature 20 720 > th dose independent rect. 18 10
34 661.30 humidity 80 270 < th dose dependent rect. 21 11
35 661.43 humidity 80 10 < th dose independent rect. 11 23
36 661.48 humidity 80 90 < th dose dependent rect. 22 9
40 662.07 temperature 20 720 > th dose independent rect. 18 12
47 662.28 temperature 20 720 > th dose dependent rect. 20 10
54 662.93 humidity 80 10 < th dose independent rect. 20 23
61 663.88 temperature 20 720 > th dose independent rect. 9 21
63 663.95 humidity 80 10 < th dose independent sin 9 NA
66 664.08 humidity 70 30 > th dose dependent rect. 21 19
69 664.29 humidity 80 10 < th dose independent rect. 15 23
72 664.37 humidity 80 30 > th dose independent rect. 7 23
74 664.45 humidity 50 30 > th dose dependent rect. 19 23
79 664.97 temperature 20 720 < th dose independent rect. 5 19
85 665.31 temperature 20 720 > th dose independent rect. 9 15
89 665.36 temperature 20 720 > th dose independent sin 15 NA
95 665.57 humidity 90 30 < th dose dependent sin 9 NA
98 665.59 humidity 80 10 < th dose independent rect. 23 23
99 665.61 humidity 80 10 < th dose independent no NA NA
109 665.80 temperature 20 720 < th dose dependent rect. 8 16
113 665.99 humidity 80 10 < th dose independent rect. 7 23
114 666.02 temperature 20 720 < th dose dependent rect. 10 14
116 666.02 temperature 20 270 < th dose dependent rect. 5 22
123 666.13 temperature 20 720 < th dose dependent rect. 15 9
128 666.16 humidity 80 10 < th dose independent rect. 5 23
129 666.21 temperature 20 720 < th dose dependent rect. 18 6
134 666.40 humidity 80 10 < th dose independent rect. 3 23
136 666.43 humidity 80 10 < th dose independent rect. 1 23
160 667.32 temperature 25 720 < th dose dependent rect. 21 4
161 667.35 humidity 80 10 < th dose independent rect. 15 21
184 667.81 humidity 80 10 < th dose independent rect. 17 23
204 668.15 temperature 10 720 > th dose dependent rect. 20 10
213 668.19 temperature 20 720 > th dose independent rect. 5 19
227 668.30 temperature 25 720 < th dose dependent sin 14 NA
239 668.58 temperature 20 270 < th dose independent rect. 5 22
260 668.93 humidity 80 30 > th dose dependent rect. 7 23
294 669.66 temperature 20 30 > th dose independent rect. 21 9
315 670.03 humidity 70 30 > th dose dependent rect. 21 17
319 670.10 humidity 80 30 > th dose independent rect. 1 23
336 670.37 humidity 80 30 > th dose independent rect. 21 19
351 670.53 humidity 90 30 < th dose dependent rect. 13 23
352 670.55 humidity 80 30 > th dose independent rect. 21 23
354 670.55 humidity 50 30 > th dose dependent rect. 7 23
358 670.60 temperature 15 270 > th dose dependent sin 9 NA
361 670.64 humidity 50 30 > th dose dependent sin 9 NA
376 670.77 humidity 80 10 < th dose independent rect. 9 23
401 671.06 temperature 25 720 < th dose dependent rect. 16 19
430 671.45 temperature 25 270 < th dose dependent rect. 20 15
431 671.45 humidity 80 30 > th dose dependent rect. 1 23
437 671.53 humidity 50 30 > th dose dependent rect. 1 23
440 671.60 temperature 20 270 > th dose independent sin 10 NA
458 671.77 temperature 20 720 > th dose dependent sin 11 NA
477 671.96 humidity 80 270 < th dose independent rect. 21 11
509 672.28 humidity 80 270 < th dose independent rect. 20 13
513 672.30 humidity 50 30 > th dose dependent no NA NA
527 672.40 humidity 50 10 > th dose dependent rect. 21 23
567 672.72 humidity 80 90 < th dose independent rect. 23 8
607 673.01 humidity 90 30 < th dose dependent rect. 11 23
692 673.74 temperature 20 270 > th dose independent rect. 16 23
727 673.95 humidity 80 30 > th dose dependent no NA NA
742 674.04 humidity 80 30 > th dose dependent rect. 13 23
750 674.06 humidity 80 30 > th dose dependent rect. 11 23
754 674.08 humidity 80 30 > th dose dependent rect. 9 23
755 674.08 humidity 80 30 > th dose dependent rect. 15 23
768 674.14 humidity 50 30 > th dose dependent rect. 9 23
829 674.48 temperature 20 720 > th dose independent rect. 18 19
863 674.69 humidity 80 270 < th dose independent sin 11 NA
875 674.76 temperature 20 720 > th dose independent rect. 11 10
892 674.85 temperature 20 720 > th dose independent rect. 1 23
944 675.06 humidity 90 30 < th dose dependent rect. 15 21
954 675.09 temperature 25 720 < th dose dependent no NA NA
958 675.10 temperature 20 270 < th dose independent no NA NA
968 675.12 temperature 20 10 > th dose independent rect. 21 11
988 675.21 humidity 80 30 > th dose dependent rect. 5 23
1000 675.31 humidity 80 30 > th dose independent rect. 18 23