BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0704400 Os01g0704400|AK072965
         (301 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0704400  Conserved hypothetical protein                      451   e-127
Os02g0302500  Conserved hypothetical protein                      310   1e-84
AK058828                                                          302   2e-82

>Os01g0704400 Conserved hypothetical protein
          Length = 301

 Score =  451 bits (1160), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 228/283 (80%), Positives = 228/283 (80%)

Query: 19  FLAPGXXXXXXXXXXXXXXXXXXXXXXVADGXXXXXXXRGPGWLSTAPSQIQPSLIPDSP 78
           FLAPG                      VADG       RGPGWLSTAPSQIQPSLIPDSP
Sbjct: 19  FLAPGRRRHRTVPTPPVSPPSRLLLHRVADGSMSSSSSRGPGWLSTAPSQIQPSLIPDSP 78

Query: 79  ILTAPSQRRGGVVAREMTGGESEEGEADGNPPSVTLALQSPFTVEPCVVAFPRRCHHIKA 138
           ILTAPSQRRGGVVAREMTGGESEEGEADGNPPSVTLALQSPFTVEPCVVAFPRRCHHIKA
Sbjct: 79  ILTAPSQRRGGVVAREMTGGESEEGEADGNPPSVTLALQSPFTVEPCVVAFPRRCHHIKA 138

Query: 139 PHAWSSFPEAGRNGRSLAKAPSRSGQLPQQQRVHGLLHCSVRGSGLFCQRGHCLIHHRRG 198
           PHAWSSFPEAGRNGRSLAKAPSRSGQLPQQQRVHGLLHCSVRGSGLFCQRGHCLIHHRRG
Sbjct: 139 PHAWSSFPEAGRNGRSLAKAPSRSGQLPQQQRVHGLLHCSVRGSGLFCQRGHCLIHHRRG 198

Query: 199 FFPFPKCTTYLPLRNFFFRMKLIEYQWLLQQDVRTGKPSLDMFLAEMRRFEVLPSVKNCW 258
           FFPFPKCTTYLPLRNFFFRMKLIEYQWLLQQDVRTGKPSLDMFLAEMRRFEVLPSVKNCW
Sbjct: 199 FFPFPKCTTYLPLRNFFFRMKLIEYQWLLQQDVRTGKPSLDMFLAEMRRFEVLPSVKNCW 258

Query: 259 NVTXXXXXXXXXXXPVYCHRXXXXXXXXXXXXXXXGAEVHLTV 301
           NVT           PVYCHR               GAEVHLTV
Sbjct: 259 NVTSLLLARSLLLAPVYCHRAAASSPEPLSSPSAAGAEVHLTV 301



>Os02g0302500 Conserved hypothetical protein
          Length = 230

 Score =  310 bits (793), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 155/175 (88%), Positives = 157/175 (89%)

Query: 46  VADGXXXXXXXRGPGWLSTAPSQIQPSLIPDSPILTAPSQRRGGVVAREMTGGESEEGEA 105
           VADG       RGPG LSTAPSQIQPSLIPDSPI TAPSQRRGG VAREMTGGESEEGEA
Sbjct: 46  VADGSMSSSSSRGPGQLSTAPSQIQPSLIPDSPIPTAPSQRRGGAVAREMTGGESEEGEA 105

Query: 106 DGNPPSVTLALQSPFTVEPCVVAFPRRCHHIKAPHAWSSFPEAGRNGRSLAKAPSRSGQL 165
           DGN PSVTLALQSPFTVEPCVVAFPRRCHHIKAPHAWSSFPEAG NGRSLAKAPSRSGQL
Sbjct: 106 DGNHPSVTLALQSPFTVEPCVVAFPRRCHHIKAPHAWSSFPEAGCNGRSLAKAPSRSGQL 165

Query: 166 PQQQRVHGLLHCSVRGSGLFCQRGHCLIHHRRGFFPFPKCTTYLPLRNFFFRMKL 220
           PQQQRVHG L CSVRGSGLFCQRGHCLIHHRRGFFPFPKCTTYLPLR  FF  ++
Sbjct: 166 PQQQRVHGPLRCSVRGSGLFCQRGHCLIHHRRGFFPFPKCTTYLPLRKLFFSNEI 220



>AK058828 
          Length = 183

 Score =  302 bits (774), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 150/164 (91%), Positives = 152/164 (92%)

Query: 57  RGPGWLSTAPSQIQPSLIPDSPILTAPSQRRGGVVAREMTGGESEEGEADGNPPSVTLAL 116
           RGPG LSTAPSQIQPSLIPDSPI TAPSQRRGG VAREMTGGESEEGEADGN PSVTLAL
Sbjct: 7   RGPGQLSTAPSQIQPSLIPDSPIPTAPSQRRGGAVAREMTGGESEEGEADGNHPSVTLAL 66

Query: 117 QSPFTVEPCVVAFPRRCHHIKAPHAWSSFPEAGRNGRSLAKAPSRSGQLPQQQRVHGLLH 176
           QSPFTVEPCVVAFPRRCHHIKAPHAWSSFPEAG NGRSLAKAPSRSGQLPQQQRVHG L 
Sbjct: 67  QSPFTVEPCVVAFPRRCHHIKAPHAWSSFPEAGCNGRSLAKAPSRSGQLPQQQRVHGPLR 126

Query: 177 CSVRGSGLFCQRGHCLIHHRRGFFPFPKCTTYLPLRNFFFRMKL 220
           CSVRGSGLFCQRGHCLIHHRRGFFPFPKCTTYLPLR   F  ++
Sbjct: 127 CSVRGSGLFCQRGHCLIHHRRGFFPFPKCTTYLPLRKLSFSNEI 170



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.323    0.139    0.456 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,424,141
Number of extensions: 445813
Number of successful extensions: 1150
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1150
Number of HSP's successfully gapped: 3
Length of query: 301
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 201
Effective length of database: 11,814,401
Effective search space: 2374694601
Effective search space used: 2374694601
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 156 (64.7 bits)