BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0698100 Os01g0698100|AK100466
         (877 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0698100  SWAP/Surp domain containing protein                1322   0.0  

>Os01g0698100 SWAP/Surp domain containing protein
          Length = 877

 Score = 1322 bits (3422), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 678/877 (77%), Positives = 678/877 (77%)

Query: 1   MDLEIVGRHALLFDDDPTAEVVNSGGSLVPWAAVGAXXXXXXXXXXXXXXXXXPPXXXXX 60
           MDLEIVGRHALLFDDDPTAEVVNSGGSLVPWAAVGA                 PP     
Sbjct: 1   MDLEIVGRHALLFDDDPTAEVVNSGGSLVPWAAVGADDLLLDRHDVRHLLDRVPPRPRRS 60

Query: 61  XXXXXXXXXXXDGVSEAELDRERFLDLTADDFGGEGSQDAVSSGNGTDTGWADYNSVPFS 120
                      DGVSEAELDRERFLDLTADDFGGEGSQDAVSSGNGTDTGWADYNSVPFS
Sbjct: 61  YSAALLSAPSLDGVSEAELDRERFLDLTADDFGGEGSQDAVSSGNGTDTGWADYNSVPFS 120

Query: 121 YGSTAGSDDPNNLSTYYCPSFPVPDRLLNKLPPSEKVHQIIARTALFVSEHGGQSEIVLR 180
           YGSTAGSDDPNNLSTYYCPSFPVPDRLLNKLPPSEKVHQIIARTALFVSEHGGQSEIVLR
Sbjct: 121 YGSTAGSDDPNNLSTYYCPSFPVPDRLLNKLPPSEKVHQIIARTALFVSEHGGQSEIVLR 180

Query: 181 VKQGSNPTFGFLMPDHHLHSYFRYLVDHPQLLKDGLDADSNKGCKTANSESGHDXXXXXX 240
           VKQGSNPTFGFLMPDHHLHSYFRYLVDHPQLLKDGLDADSNKGCKTANSESGHD      
Sbjct: 181 VKQGSNPTFGFLMPDHHLHSYFRYLVDHPQLLKDGLDADSNKGCKTANSESGHDASSGGA 240

Query: 241 XXXXXXVYESGDEDEGMLPPSPKSTVPGKDVVVHEQGHESSVSAIHCNEETRDGQKXXXX 300
                 VYESGDEDEGMLPPSPKSTVPGKDVVVHEQGHESSVSAIHCNEETRDGQK    
Sbjct: 241 LSLLGAVYESGDEDEGMLPPSPKSTVPGKDVVVHEQGHESSVSAIHCNEETRDGQKATAA 300

Query: 301 XXXXXKDKSILTKKNPMITGSSLLAARLEKAKDAMMAXXXXXXXXXXXXILEPPSFLKRT 360
                KDKSILTKKNPMITGSSLLAARLEKAKDAMMA            ILEPPSFLKRT
Sbjct: 301 ATVAAKDKSILTKKNPMITGSSLLAARLEKAKDAMMASSTSDVSDTKVVILEPPSFLKRT 360

Query: 361 MEKIVEFIIRNGKEFEGKLIEQDRTTGRFPFLLPSNPYHPYYLKLLEETQESKSRGGSSE 420
           MEKIVEFIIRNGKEFEGKLIEQDRTTGRFPFLLPSNPYHPYYLKLLEETQESKSRGGSSE
Sbjct: 361 MEKIVEFIIRNGKEFEGKLIEQDRTTGRFPFLLPSNPYHPYYLKLLEETQESKSRGGSSE 420

Query: 421 PXXXXXXXXXXXXXXXXXQKDRRSPSERKGSNHGKGEXXXXXXXXXXXXXXXXXXXXXEP 480
           P                 QKDRRSPSERKGSNHGKGE                     EP
Sbjct: 421 PKDRKSSSEHKDRRSSSEQKDRRSPSERKGSNHGKGESKSKKRSSTSKDASSPDRSSAEP 480

Query: 481 SEKQLYDKHKQGKGKFHMIISGAKKEPPRNVTADEAAAIVMAATRGFGPANIQTNTLKDT 540
           SEKQLYDKHKQGKGKFHMIISGAKKEPPRNVTADEAAAIVMAATRGFGPANIQTNTLKDT
Sbjct: 481 SEKQLYDKHKQGKGKFHMIISGAKKEPPRNVTADEAAAIVMAATRGFGPANIQTNTLKDT 540

Query: 541 SGIGQTRGDNGHTSSFGSFSSLQDPDVPSKPVSNSEACTSLTSSGQPKNEGTGIIDDDWI 600
           SGIGQTRGDNGHTSSFGSFSSLQDPDVPSKPVSNSEACTSLTSSGQPKNEGTGIIDDDWI
Sbjct: 541 SGIGQTRGDNGHTSSFGSFSSLQDPDVPSKPVSNSEACTSLTSSGQPKNEGTGIIDDDWI 600

Query: 601 ANTIXXXXXXXXXXXXXXXXXXMTKEQKLKAERLRRAKMFTSIIKSGGSKMADLSTSADQ 660
           ANTI                  MTKEQKLKAERLRRAKMFTSIIKSGGSKMADLSTSADQ
Sbjct: 601 ANTIAKAAAVAASKEADSSEASMTKEQKLKAERLRRAKMFTSIIKSGGSKMADLSTSADQ 660

Query: 661 TNEAGRASPGDLNLSESDPQPSAKEREGSSVPFEREGSNLAKQEKDSDDERNRARKYRKK 720
           TNEAGRASPGDLNLSESDPQPSAKEREGSSVPFEREGSNLAKQEKDSDDERNRARKYRKK
Sbjct: 661 TNEAGRASPGDLNLSESDPQPSAKEREGSSVPFEREGSNLAKQEKDSDDERNRARKYRKK 720

Query: 721 HHPXXXXXXXXXXXXXKHSRKKHRSEDSRAHTSDVHKHKLKRHSKDLEPXXXXXXXXXXX 780
           HHP             KHSRKKHRSEDSRAHTSDVHKHKLKRHSKDLEP           
Sbjct: 721 HHPESDEENYDSEESYKHSRKKHRSEDSRAHTSDVHKHKLKRHSKDLEPRHHRHRDSSSE 780

Query: 781 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTIVLPEV 840
                                                                TIVLPEV
Sbjct: 781 DEHEHRSSKSRHRHRDDYHYHEDDEHRSSHRHQRDHRSSSKRKKDDDRDKSKQTIVLPEV 840

Query: 841 SQNQEKPPGDTAQSSQATTEVPSELRAKIRAMLLETL 877
           SQNQEKPPGDTAQSSQATTEVPSELRAKIRAMLLETL
Sbjct: 841 SQNQEKPPGDTAQSSQATTEVPSELRAKIRAMLLETL 877



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.309    0.128    0.366 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 25,599,903
Number of extensions: 998061
Number of successful extensions: 2372
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 2365
Number of HSP's successfully gapped: 2
Length of query: 877
Length of database: 17,035,801
Length adjustment: 110
Effective length of query: 767
Effective length of database: 11,292,261
Effective search space: 8661164187
Effective search space used: 8661164187
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 160 (66.2 bits)