Os01g0698100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : SWAP/Surp domain containing protein.
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Os01g0698100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : SWAP/Surp domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 18.43 | 0.202 | 10.3 | -0.26 | 0.333 | -0.0769 | 0.0215 | 1.47 | 0.103 | 4.59 | 29.66 | 304 | -- | -- |
| 20.33 | 0.212 | 10.3 | -0.257 | 0.37 | -0.158 | 0.647 | -- | 0.122 | 3.48 | 19.11 | 2344 | -- | -- |
| 18.43 | 0.2 | 10.3 | -0.261 | 0.332 | -0.0759 | -- | 1.48 | 0.102 | 4.59 | 29.66 | 305 | -- | -- |
| 21.18 | 0.214 | 10.3 | -0.239 | 0.301 | -0.252 | -- | -- | 0.105 | 4.21 | 31.53 | 39038 | -- | -- |
| 21.4 | 0.215 | 10.4 | -0.295 | -- | 0.244 | -- | 1.77 | 0.121 | -- | 35.06 | 421 | -- | -- |
| 21.46 | 0.217 | 10.3 | -0.258 | 0.3 | -- | 0.624 | -- | 0.118 | 4.46 | -- | -- | -- | -- |
| 22.45 | 0.222 | 10.3 | -0.262 | 0.308 | -- | -- | -- | 0.115 | 4.85 | -- | -- | -- | -- |
| 24.97 | 0.233 | 10.3 | -0.207 | -- | 0.27 | -- | -- | 0.138 | -- | 30.39 | 518 | -- | -- |
| 21.45 | 0.216 | 10.3 | -- | 0.311 | -0.348 | -- | -- | 0.168 | 4.83 | 46.45 | 47520 | -- | -- |
| 27.45 | 0.245 | 10.3 | -0.251 | -- | -- | -- | -- | 0.123 | -- | -- | -- | -- | -- |
| 24.27 | 0.23 | 10.3 | -- | 0.303 | -- | -- | -- | 0.144 | 4.88 | -- | -- | -- | -- |
| 25.88 | 0.237 | 10.3 | -- | -- | 0.291 | -- | -- | 0.175 | -- | 20.05 | 465 | -- | -- |
| 29.11 | 0.252 | 10.3 | -- | -- | -- | -- | -- | 0.151 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 17.86 | radiation | 1 | 720 | > th | dose dependent | sin | 7 | NA |
| 5 | 18.00 | radiation | 20 | 720 | > th | dose dependent | sin | 9 | NA |
| 9 | 18.05 | radiation | 1 | 720 | > th | dose dependent | rect. | 5 | 8 |
| 45 | 18.20 | radiation | 20 | 720 | > th | dose dependent | rect. | 7 | 5 |
| 135 | 18.31 | temperature | 20 | 720 | < th | dose independent | rect. | 4 | 2 |
| 136 | 18.31 | radiation | 30 | 720 | < th | dose independent | rect. | 7 | 8 |
| 165 | 18.34 | radiation | 30 | 720 | < th | dose independent | rect. | 6 | 11 |
| 166 | 18.34 | radiation | 30 | 720 | < th | dose independent | rect. | 5 | 13 |
| 209 | 18.39 | radiation | 40 | 720 | > th | dose independent | sin | 10 | NA |
| 228 | 18.40 | radiation | 30 | 270 | < th | dose independent | rect. | 12 | 23 |
| 237 | 18.41 | radiation | 30 | 270 | < th | dose independent | rect. | 14 | 23 |
| 250 | 18.42 | radiation | 30 | 720 | > th | dose independent | sin | 8 | NA |
| 252 | 18.42 | radiation | 30 | 270 | < th | dose independent | rect. | 10 | 23 |
| 261 | 18.44 | radiation | 30 | 720 | < th | dose independent | rect. | 5 | 22 |
| 281 | 18.48 | radiation | 30 | 270 | < th | dose independent | no | NA | NA |
| 284 | 18.48 | radiation | 30 | 270 | < th | dose independent | rect. | 2 | 23 |
| 287 | 18.49 | radiation | 40 | 720 | < th | dose independent | sin | 1 | NA |
| 293 | 18.49 | radiation | 30 | 270 | < th | dose independent | rect. | 21 | 23 |
| 299 | 18.51 | radiation | 30 | 270 | < th | dose independent | rect. | 23 | 23 |
| 301 | 18.52 | radiation | 30 | 270 | < th | dose independent | rect. | 19 | 23 |
| 309 | 18.54 | radiation | 30 | 1440 | < th | dose independent | rect. | 16 | 20 |
| 318 | 18.55 | radiation | 20 | 270 | > th | dose dependent | rect. | 11 | 23 |
| 335 | 18.59 | radiation | 40 | 720 | > th | dose independent | rect. | 8 | 4 |
| 377 | 18.60 | radiation | 20 | 270 | > th | dose dependent | no | NA | NA |
| 386 | 18.60 | radiation | 20 | 270 | > th | dose dependent | rect. | 7 | 9 |
| 530 | 18.61 | radiation | 30 | 1440 | < th | dose independent | rect. | 18 | 18 |
| 597 | 18.64 | radiation | 20 | 270 | > th | dose dependent | sin | 1 | NA |
| 658 | 18.68 | radiation | 30 | 270 | < th | dose independent | sin | 22 | NA |
| 942 | 18.72 | radiation | 30 | 1440 | < th | dose independent | sin | 9 | NA |