BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0692300 Os01g0692300|AK120588
(609 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0692300 Conserved hypothetical protein 767 0.0
Os05g0550100 110 2e-24
Os07g0576600 Conserved hypothetical protein 67 3e-11
>Os01g0692300 Conserved hypothetical protein
Length = 609
Score = 767 bits (1981), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 416/609 (68%), Positives = 416/609 (68%)
Query: 1 MEAAITMDENLGRSGSFRAAMSIFGESINGRKADKNRGTVPAQENLSSEMKQLAQSGLDK 60
MEAAITMDENLGRSGSFRAAMSIFGESINGRKADKNRGTVPAQENLSSEMKQLAQSGLDK
Sbjct: 1 MEAAITMDENLGRSGSFRAAMSIFGESINGRKADKNRGTVPAQENLSSEMKQLAQSGLDK 60
Query: 61 LNERKAYVDKERAGAESELSRARAMAKELERQIEQTTAKATSQRSELQAMWAARTRRKGT 120
LNERKAYVDKERAGAESELSRARAMAKELERQIEQTTAKATSQRSELQAMWAARTRRKGT
Sbjct: 61 LNERKAYVDKERAGAESELSRARAMAKELERQIEQTTAKATSQRSELQAMWAARTRRKGT 120
Query: 121 DAPGAERDARYAEVVQELDQAKKXXXXXXXXXXXXAIDEMKRRVDEANEEHVLVXXXXXX 180
DAPGAERDARYAEVVQELDQAKK AIDEMKRRVDEANEEHVLV
Sbjct: 121 DAPGAERDARYAEVVQELDQAKKELLRLRLEVRLRAIDEMKRRVDEANEEHVLVELARIE 180
Query: 181 XXXXXXXXXXXXXXXXXXFAADIEAARARVRALQKEASRAREMEAKLAVTNSDVEVLQAE 240
FAADIEAARARVRALQKEASRAREMEAKLAVTNSDVEVLQAE
Sbjct: 181 AERERREIEAQRGAEAERFAADIEAARARVRALQKEASRAREMEAKLAVTNSDVEVLQAE 240
Query: 241 MELVRAMEKSHAKSXXXXXXXXXXXXXXXQXXXXXXXXXXXXXXXXXXXXXIKAGSFQFM 300
MELVRAMEKSHAKS Q IKAGSFQFM
Sbjct: 241 MELVRAMEKSHAKSDEAAEDAARRKKEEAQDKALLKTAEAELDAAKKELETIKAGSFQFM 300
Query: 301 TSMDCTRTEIMRVAEEIRLLKAKEKKADAQVQQLNTKLLKAKARLEAVTAADERSKAIVS 360
TSMDCTRTEIMRVAEEIRLLKAKEKKADAQVQQLNTKLLKAKARLEAVTAADERSKAIVS
Sbjct: 301 TSMDCTRTEIMRVAEEIRLLKAKEKKADAQVQQLNTKLLKAKARLEAVTAADERSKAIVS 360
Query: 361 NLAAAMKQLKAETEAARMEEDLTKLEKRCVXXXXXXXXXXXXXXXGRIKQSVXXXXXXXX 420
NLAAAMKQLKAETEAARMEEDLTKLEKRCV GRIKQSV
Sbjct: 361 NLAAAMKQLKAETEAARMEEDLTKLEKRCVIAEAENIEKEIATTEGRIKQSVKELDAAKA 420
Query: 421 XXXXXXXXXRDTVESTMQXXXXXXXXXQGTMTISRFEYEYLTGRAALVRVVTDXXXXXXX 480
RDTVESTMQ QGTMTISRFEYEYLTGRAALVRVVTD
Sbjct: 421 LEAEAMRKLRDTVESTMQARASSAARRQGTMTISRFEYEYLTGRAALVRVVTDKKVAAAQ 480
Query: 481 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLYDLNAAAE 540
LYDLNAAAE
Sbjct: 481 AWVQALKASEKEAAARAEAAEREVREMEARAAQVAAEAEKTAAEQKELEQELYDLNAAAE 540
Query: 541 RDGLQCAYPXXXXXXXXXXXXXXXXXXXXXXAGAWNPRSPSFTIKRKRKVMPNLLKLIKN 600
RDGLQCAYP AGAWNPRSPSFTIKRKRKVMPNLLKLIKN
Sbjct: 541 RDGLQCAYPRRRSSRVSATSRRSKPRRSSVSAGAWNPRSPSFTIKRKRKVMPNLLKLIKN 600
Query: 601 KRGGKKNTN 609
KRGGKKNTN
Sbjct: 601 KRGGKKNTN 609
>Os05g0550100
Length = 788
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 74/181 (40%), Positives = 93/181 (51%), Gaps = 3/181 (1%)
Query: 292 IKAGSFQFMTSMDCTRTEIMRVAEEIRLLKAKEKKADAQVQQLNTKLLKAKARLEAVTAA 351
IKA +F S++ TR E RV +EIR L +EK A A VQQLN KLLKA++RLEAVTAA
Sbjct: 497 IKAEGLRFTASIERTRRETARVTDEIRRLTEQEKAASAHVQQLNAKLLKARSRLEAVTAA 556
Query: 352 DERSKAIVSNLAAAMKQLKAETEAARMEEDLTKLEKRCVXXXXXXXXXXXXXXXGRIKQS 411
DER+ +S LAA ++QL+ + AA E+ L E R RI++S
Sbjct: 557 DERADETISKLAAILRQLEDDAAAAEKEKTLADTENRRAMSDAENIDAEIAAAEKRIRES 616
Query: 412 VXXXXXXXXXXXXXXXXXRDTVESTMQXXXXXX---XXXQGTMTISRFEYEYLTGRAALV 468
V + VES G +TI RFEYEYLTGRA +V
Sbjct: 617 VRELGAARASEAAATARLKAIVESATLATAAAATPRSSSSGNVTIPRFEYEYLTGRAEVV 676
Query: 469 R 469
R
Sbjct: 677 R 677
Score = 92.0 bits (227), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 71/159 (44%), Positives = 88/159 (55%), Gaps = 29/159 (18%)
Query: 7 MDENLGRSGSFRAAMSIFGESINGRKADKNRGTVPAQENLSSEMKQLAQSGLDKLNERKA 66
M+EN SGS AM IFG+SI+ R+ K+R V + +NLS E+++ S KL+ RKA
Sbjct: 222 MEENSVGSGSGGNAMDIFGQSIDVRRPSKSRRRVVSHKNLSPEIEESIGSSRRKLHRRKA 281
Query: 67 YV-DKERAGAESELSRARAMAKELERQIEQTTAKATSQRSELQAMWAARTRRKGTDAPGA 125
D+E+A ESELSRA MA ELERQIEQT AKA S+RSELQ RTR G G+
Sbjct: 282 IAEDQEQARVESELSRAMNMAMELERQIEQTNAKARSRRSELQRQ---RTRASGG---GS 335
Query: 126 ERDAR----------------------YAEVVQELDQAK 142
R Y EV+QELD+ K
Sbjct: 336 RRKTARGLAAEAAGGAPAHRQEGVGTAYGEVMQELDRVK 374
>Os07g0576600 Conserved hypothetical protein
Length = 196
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/121 (39%), Positives = 65/121 (53%), Gaps = 10/121 (8%)
Query: 292 IKAGSFQFMTSMDCTRTEIMRVAEEIRLLKAKEKKADAQVQQLNTKLLKAKARLEAVTAA 351
IK +F TS++ TR E RV +EI L +EK A AQ A++RLEAVTAA
Sbjct: 32 IKEEGLRFTTSIERTRRETARVTDEIPRLTEQEKAASAQ----------ARSRLEAVTAA 81
Query: 352 DERSKAIVSNLAAAMKQLKAETEAARMEEDLTKLEKRCVXXXXXXXXXXXXXXXGRIKQS 411
DER+ +S LAA ++QL+ + EAA E+ LT+ E R RI++S
Sbjct: 82 DERADETISKLAAILRQLEDDAEAAEKEKTLTETENRRAMSDAENIDAEIAAAEQRIRES 141
Query: 412 V 412
V
Sbjct: 142 V 142
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.312 0.123 0.321
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,215,541
Number of extensions: 270010
Number of successful extensions: 1636
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1628
Number of HSP's successfully gapped: 5
Length of query: 609
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 502
Effective length of database: 11,448,903
Effective search space: 5747349306
Effective search space used: 5747349306
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 159 (65.9 bits)