BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0682500 Os01g0682500|AK068815
         (418 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0682500  Conserved hypothetical protein                      726   0.0  

>Os01g0682500 Conserved hypothetical protein
          Length = 418

 Score =  726 bits (1874), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/390 (90%), Positives = 354/390 (90%)

Query: 29  RAKPYHPKAAACSFTVTATTPSRKAFLSCPDHGQXXXXXXXXXXXXXXXXXXXXXVQDLY 88
           RAKPYHPKAAACSFTVTATTPSRKAFLSCPDHGQ                     VQDLY
Sbjct: 29  RAKPYHPKAAACSFTVTATTPSRKAFLSCPDHGQAAAGAAPPRSAPASSPALISSVQDLY 88

Query: 89  DFICSGPLVDRIGYTKEKIAGSIDRWLRCGVQVARLFRLNELHLSEAEKARIYHFYIPVF 148
           DFICSGPLVDRIGYTKEKIAGSIDRWLRCGVQVARLFRLNELHLSEAEKARIYHFYIPVF
Sbjct: 89  DFICSGPLVDRIGYTKEKIAGSIDRWLRCGVQVARLFRLNELHLSEAEKARIYHFYIPVF 148

Query: 149 LWCEDQVTEHRAKYKDGDEIPPLVIGVSAPQGSGKTTLVFALDYLFRVAGRNAATLSIDD 208
           LWCEDQVTEHRAKYKDGDEIPPLVIGVSAPQGSGKTTLVFALDYLFRVAGRNAATLSIDD
Sbjct: 149 LWCEDQVTEHRAKYKDGDEIPPLVIGVSAPQGSGKTTLVFALDYLFRVAGRNAATLSIDD 208

Query: 209 FYLTAAEQGKLRERNPGNALLELRGNAGSHDLPFSVXXXXXXXXXXXXXXXMKLPRYDKS 268
           FYLTAAEQGKLRERNPGNALLELRGNAGSHDLPFSV               MKLPRYDKS
Sbjct: 209 FYLTAAEQGKLRERNPGNALLELRGNAGSHDLPFSVETLESLLKLTKEGLKMKLPRYDKS 268

Query: 269 AFGGRGDRADPSTWPEVEGPLEVVLFEGWMLGFKPLPNEVVKAVDPQLEVVNKNLEAYYD 328
           AFGGRGDRADPSTWPEVEGPLEVVLFEGWMLGFKPLPNEVVKAVDPQLEVVNKNLEAYYD
Sbjct: 269 AFGGRGDRADPSTWPEVEGPLEVVLFEGWMLGFKPLPNEVVKAVDPQLEVVNKNLEAYYD 328

Query: 329 AWDRFIGSWMVIKIKEPSCVYQWRLQAEIAMRADGKPGMSDEEVMDFVSRYLPAYHAYLP 388
           AWDRFIGSWMVIKIKEPSCVYQWRLQAEIAMRADGKPGMSDEEVMDFVSRYLPAYHAYLP
Sbjct: 329 AWDRFIGSWMVIKIKEPSCVYQWRLQAEIAMRADGKPGMSDEEVMDFVSRYLPAYHAYLP 388

Query: 389 TLYKEGPNGSNPDHLLVVDIDEKRNPMWGR 418
           TLYKEGPNGSNPDHLLVVDIDEKRNPMWGR
Sbjct: 389 TLYKEGPNGSNPDHLLVVDIDEKRNPMWGR 418



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.138    0.436 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,469,559
Number of extensions: 534402
Number of successful extensions: 1291
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1290
Number of HSP's successfully gapped: 1
Length of query: 418
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 315
Effective length of database: 11,657,759
Effective search space: 3672194085
Effective search space used: 3672194085
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 157 (65.1 bits)