Os01g0682500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0682500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 32.14 | 0.266 | 13.6 | -0.237 | 0.361 | -0.55 | 0.652 | 7.06 | -0.373 | 10.4 | 30.9 | 4085 | -- | -- |
| 34.28 | 0.275 | 13.8 | -1.28 | 0.325 | 0.431 | 0.733 | -- | -0.474 | 8.37 | 23.47 | 47520 | -- | -- |
| 33.85 | 0.271 | 13.6 | -0.208 | 0.356 | -0.557 | -- | 7.05 | -0.373 | 10.5 | 30.85 | 4108 | -- | -- |
| 35.17 | 0.278 | 13.8 | -1.29 | 0.308 | 0.498 | -- | -- | -0.5 | 8.11 | 19.77 | 38978 | -- | -- |
| 41.58 | 0.3 | 13.6 | -0.0988 | -- | -0.677 | -- | 7.78 | -0.376 | -- | 30.9 | 4106 | -- | -- |
| 37.26 | 0.286 | 13.8 | -1.21 | 0.351 | -- | 0.638 | -- | -0.418 | 10.1 | -- | -- | -- | -- |
| 38.86 | 0.292 | 13.8 | -1.18 | 0.347 | -- | -- | -- | -0.416 | 10.2 | -- | -- | -- | -- |
| 40.33 | 0.297 | 13.8 | -1.3 | -- | 0.591 | -- | -- | -0.501 | -- | 16.08 | 47520 | -- | -- |
| 51.9 | 0.336 | 13.7 | -- | 0.327 | -0.762 | -- | -- | -0.0233 | 9.82 | 16.03 | 47436 | -- | -- |
| 46.19 | 0.318 | 13.8 | -1.19 | -- | -- | -- | -- | -0.417 | -- | -- | -- | -- | -- |
| 75.86 | 0.407 | 13.7 | -- | 0.354 | -- | -- | -- | -0.284 | 10.5 | -- | -- | -- | -- |
| 58.05 | 0.355 | 13.7 | -- | -- | -0.812 | -- | -- | -0.0415 | -- | 7.953 | 47520 | -- | -- |
| 83.54 | 0.427 | 13.7 | -- | -- | -- | -- | -- | -0.285 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 29.09 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 15 | 4 |
| 5 | 29.12 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 15 | 5 |
| 33 | 29.13 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 12 | 8 |
| 36 | 29.17 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 17 | 3 |
| 48 | 29.18 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 10 | 10 |
| 50 | 29.19 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 15 | 4 |
| 66 | 29.28 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 7 | 13 |
| 129 | 29.40 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 21 | 14 |
| 187 | 29.83 | temperature | 10.0 | 90 | > th | dose dependent | sin | 6 | NA |
| 193 | 29.91 | temperature | 30.0 | 90 | < th | dose dependent | sin | 6 | NA |
| 209 | 29.99 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 23 | 14 |
| 236 | 30.21 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 1 | 10 |
| 240 | 30.23 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 22 | 1 |
| 259 | 30.44 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 23 | 16 |
| 269 | 30.53 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 1 | 22 |
| 272 | 30.55 | atmosphere | 1000.0 | 90 | > th | dose independent | rect. | 15 | 16 |
| 298 | 30.64 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 15 | 16 |
| 301 | 30.65 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 1 | 17 |
| 309 | 30.69 | temperature | 25.0 | 90 | > th | dose independent | rect. | 23 | 16 |
| 310 | 30.69 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 17 | 2 |
| 322 | 30.74 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 16 | 5 |
| 324 | 30.77 | radiation | 10.0 | 43200 | < th | dose dependent | rect. | 20 | 8 |
| 350 | 30.85 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 6 | 1 |
| 352 | 30.85 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 15 | 17 |
| 357 | 30.88 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 1 | 7 |
| 369 | 30.93 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 15 | 17 |
| 373 | 30.95 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 24 | 2 |
| 374 | 30.95 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 3 | 5 |
| 380 | 30.95 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 6 | 19 |
| 392 | 30.99 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 16 | 13 |
| 395 | 31.00 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 16 | 8 |
| 401 | 31.02 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 24 | 4 |
| 412 | 31.04 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 7 | 22 |
| 416 | 31.05 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 15 |
| 426 | 31.08 | wind | 9.0 | 43200 | > th | dose independent | rect. | 17 | 4 |
| 434 | 31.10 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 13 | 18 |
| 465 | 31.15 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 10 | 1 |
| 466 | 31.15 | radiation | 10.0 | 43200 | < th | dose dependent | rect. | 22 | 6 |
| 473 | 31.17 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 2 | 5 |
| 477 | 31.17 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 1 | 20 |
| 485 | 31.20 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 3 | 4 |
| 486 | 31.20 | wind | 9.0 | 43200 | > th | dose independent | rect. | 17 | 7 |
| 488 | 31.20 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 8 |
| 491 | 31.21 | wind | 9.0 | 43200 | < th | dose independent | rect. | 17 | 4 |
| 497 | 31.23 | temperature | 20.0 | 270 | > th | dose independent | rect. | 5 | 21 |
| 502 | 31.24 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 1 | 14 |
| 504 | 31.24 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 3 | 16 |
| 508 | 31.25 | wind | 9.0 | 43200 | > th | dose independent | rect. | 17 | 10 |
| 511 | 31.25 | temperature | 20.0 | 270 | > th | dose independent | rect. | 20 | 15 |
| 513 | 31.25 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 2 |
| 555 | 31.32 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 5 | 2 |
| 582 | 31.36 | wind | 7.0 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 589 | 31.37 | wind | 9.0 | 43200 | < th | dose independent | rect. | 17 | 10 |
| 602 | 31.39 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 22 | 4 |
| 652 | 31.45 | atmosphere | 1005.0 | 43200 | < th | dose dependent | rect. | 13 | 2 |
| 696 | 31.50 | temperature | 25.0 | 90 | > th | dose independent | rect. | 23 | 14 |
| 711 | 31.51 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 2 | 1 |
| 720 | 31.51 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 12 | 22 |
| 792 | 31.59 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 21 | 2 |
| 894 | 31.66 | atmosphere | 1005.0 | 43200 | < th | dose dependent | sin | 22 | NA |
| 896 | 31.66 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 908 | 31.67 | wind | 1.0 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 924 | 31.68 | temperature | 25.0 | 270 | > th | dose independent | sin | 8 | NA |
| 972 | 31.71 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 20 | 6 |