BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0680500 Os01g0680500|AK069325
         (145 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0680500  Conserved hypothetical protein                      150   3e-37

>Os01g0680500 Conserved hypothetical protein
          Length = 145

 Score =  150 bits (379), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 87/145 (60%), Positives = 87/145 (60%)

Query: 1   MSRGRGRVPREGASAVAPGYTSCCCCFFLATCRHCCVVDLSSPAIXXXXXXXXXXXXXXX 60
           MSRGRGRVPREGASAVAPGYTSCCCCFFLATCRHCCVVDLSSPAI               
Sbjct: 1   MSRGRGRVPREGASAVAPGYTSCCCCFFLATCRHCCVVDLSSPAIPVPDRRRQQPPPCRA 60

Query: 61  XXXXXXXXXXXXXXXXHRRRGGHPILQNRSRIRSIAGGSCSAIAMXXXXXXXXXXXXXXX 120
                           HRRRGGHPILQNRSRIRSIAGGSCSAIAM               
Sbjct: 61  PVASSSSLSSPAPSSPHRRRGGHPILQNRSRIRSIAGGSCSAIAMPRHHSSRRRRRLPLG 120

Query: 121 XXXXXXXXXXXXTTPPPPAADDSWW 145
                       TTPPPPAADDSWW
Sbjct: 121 VGRRDRHRSRIRTTPPPPAADDSWW 145



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.326    0.136    0.487 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,317,368
Number of extensions: 106697
Number of successful extensions: 452
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 448
Number of HSP's successfully gapped: 1
Length of query: 145
Length of database: 17,035,801
Length adjustment: 91
Effective length of query: 54
Effective length of database: 12,284,327
Effective search space: 663353658
Effective search space used: 663353658
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 151 (62.8 bits)