BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0680400 Os01g0680400|AK067914
         (211 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0680400  TAFII28-like protein family protein                 280   4e-76

>Os01g0680400 TAFII28-like protein family protein
          Length = 211

 Score =  280 bits (717), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 148/211 (70%), Positives = 148/211 (70%)

Query: 1   MKDPFXXXXXXXXXXXXXXXXXXXXXXGAPEGYDGAXXXXXXXXXXXXXXXXXXXXXXXX 60
           MKDPF                      GAPEGYDGA                        
Sbjct: 1   MKDPFEAAVEEQESPPESPAANEEDAAGAPEGYDGASGSRGPPLRLPPSRAAPSGSGGAA 60

Query: 61  XXXXXXKVVRVQKXXXXXXXXXXXHMEVDLDKLPSGTSDPDKLAKMNAILSQFTEDQMNR 120
                 KVVRVQK           HMEVDLDKLPSGTSDPDKLAKMNAILSQFTEDQMNR
Sbjct: 61  AAAARGKVVRVQKEQQEEEDDEEDHMEVDLDKLPSGTSDPDKLAKMNAILSQFTEDQMNR 120

Query: 121 YESFRRSGFQKSNMKKLLASITGSQKISLPTTIVVSGIAKMFVGELVETARIVMTERKDS 180
           YESFRRSGFQKSNMKKLLASITGSQKISLPTTIVVSGIAKMFVGELVETARIVMTERKDS
Sbjct: 121 YESFRRSGFQKSNMKKLLASITGSQKISLPTTIVVSGIAKMFVGELVETARIVMTERKDS 180

Query: 181 GPVRPCHIREAYRRLKLEGKIPRRTVPRLFR 211
           GPVRPCHIREAYRRLKLEGKIPRRTVPRLFR
Sbjct: 181 GPVRPCHIREAYRRLKLEGKIPRRTVPRLFR 211



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.135    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,427,929
Number of extensions: 131414
Number of successful extensions: 302
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 301
Number of HSP's successfully gapped: 1
Length of query: 211
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 115
Effective length of database: 12,023,257
Effective search space: 1382674555
Effective search space used: 1382674555
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 154 (63.9 bits)