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Os01g0680400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : TAFII28-like protein family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.1 (0.015) R2 : 0.0526
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.158 (0.0315) R2dN8 : 0.068 R2N8 : 0.0526
σ : 0.282
deviance : 36.39
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
30.6 0.26 12.2 -0.35 0.178 0.147 -0.0854 -1.79 0.0156 4.73 19.32 3821 -- --
32.08 0.266 12.1 0.117 0.283 0.332 -0.0971 -- 0.12 3.68 18.33 6600 -- --
30.61 0.258 12.2 -0.345 0.179 0.143 -- -1.78 0.017 4.76 19 3860 -- --
31.87 0.265 12.1 0.107 0.289 0.432 -- -- 0.115 3.67 14.14 4413 -- --
32.27 0.265 12.2 -0.334 -- 0.16 -- -1.74 0.0204 -- 18.8 3871 -- --
33.6 0.272 12.1 0.189 0.179 -- -0.152 -- 0.175 4.45 -- -- -- --
33.66 0.272 12.1 0.19 0.179 -- -- -- 0.176 4.59 -- -- -- --
34.64 0.274 12.1 0.103 -- 0.2 -- -- 0.139 -- 14 4141 -- --
32.13 0.265 12.1 -- 0.305 0.484 -- -- 0.0971 3.6 10.6 10336 -- --
35.36 0.278 12.1 0.197 -- -- -- -- 0.18 -- -- -- -- --
34.61 0.275 12.1 -- 0.183 -- -- -- 0.154 4.56 -- -- -- --
34.85 0.275 12.1 -- -- 0.254 -- -- 0.12 -- 11.06 4173 -- --
36.39 0.282 12.1 -- -- -- -- -- 0.158 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 28.95 wind 1.0 14400 < th dose dependent rect. 22 4
8 29.52 atmosphere 995.0 43200 > th dose independent rect. 18 18
9 29.52 atmosphere 995.0 43200 < th dose independent rect. 18 18
13 29.55 atmosphere 995.0 43200 > th dose independent rect. 21 16
21 29.59 atmosphere 995.0 43200 > th dose independent sin 7 NA
26 29.61 atmosphere 995.0 43200 < th dose independent sin 7 NA
27 29.61 radiation 20.0 43200 > th dose independent rect. 9 2
29 29.61 atmosphere 995.0 43200 < th dose independent rect. 21 15
53 29.67 atmosphere 995.0 43200 < th dose dependent sin 10 NA
55 29.67 atmosphere 995.0 43200 < th dose dependent rect. 17 16
57 29.68 wind 1.0 14400 < th dose independent rect. 22 4
64 29.69 radiation 30.0 43200 < th dose dependent rect. 10 1
72 29.72 humidity 90.0 43200 > th dose independent rect. 12 1
80 29.73 atmosphere 995.0 43200 < th dose dependent rect. 22 11
89 29.75 radiation 20.0 43200 > th dose independent rect. 9 5
94 29.76 precipitation 0.1 43200 > th dose independent rect. 10 3
100 29.76 precipitation 0.1 43200 > th dose dependent rect. 10 3
101 29.76 atmosphere 995.0 43200 < th dose dependent rect. 11 19
106 29.77 humidity 90.0 43200 > th dose dependent rect. 12 1
117 29.79 radiation 20.0 43200 > th dose independent rect. 13 1
122 29.79 atmosphere 995.0 43200 < th dose dependent rect. 13 20
123 29.80 atmosphere 995.0 43200 > th dose independent rect. 5 3
129 29.81 humidity 70.0 43200 > th dose independent rect. 18 1
137 29.82 radiation 20.0 43200 < th dose independent rect. 10 1
144 29.83 precipitation 0.1 43200 < th dose independent rect. 10 3
146 29.83 atmosphere 995.0 43200 > th dose independent rect. 3 6
147 29.83 atmosphere 995.0 43200 < th dose independent rect. 3 6
148 29.83 atmosphere 995.0 43200 < th dose independent rect. 1 9
155 29.83 precipitation 0.1 43200 < th dose dependent rect. 10 3
161 29.84 atmosphere 995.0 43200 > th dose independent rect. 2 8
171 29.85 atmosphere 995.0 43200 < th dose dependent rect. 4 4
179 29.87 radiation 1.0 43200 > th dose independent rect. 14 1
180 29.87 radiation 1.0 43200 < th dose independent rect. 14 1
183 29.87 radiation 1.0 43200 < th dose dependent rect. 14 1
188 29.88 atmosphere 995.0 43200 < th dose independent rect. 4 4
211 29.90 humidity 90.0 43200 < th dose independent rect. 12 1
212 29.90 wind 7.0 43200 > th dose independent rect. 21 3
242 29.92 wind 7.0 43200 < th dose independent rect. 21 3
274 29.93 radiation 20.0 43200 < th dose dependent rect. 13 1
294 29.95 humidity 90.0 43200 > th dose dependent rect. 10 4
299 29.95 atmosphere 995.0 43200 < th dose dependent rect. 21 19
308 29.96 radiation 10.0 43200 > th dose independent rect. 6 4
345 29.97 humidity 90.0 14400 > th dose dependent rect. 5 1
347 29.97 wind 5.0 43200 > th dose dependent rect. 21 3
348 29.97 radiation 20.0 43200 < th dose dependent rect. 8 6
355 29.98 humidity 70.0 43200 > th dose independent rect. 11 1
366 29.99 humidity 70.0 43200 < th dose independent rect. 11 1
368 29.99 atmosphere 995.0 43200 > th dose independent rect. 19 3
373 29.99 atmosphere 995.0 43200 < th dose dependent no NA NA
376 29.99 humidity 90.0 14400 > th dose dependent rect. 2 9
378 29.99 humidity 90.0 14400 > th dose dependent rect. 2 11
392 30.00 temperature 15.0 10 > th dose dependent rect. 20 9
395 30.00 humidity 90.0 14400 > th dose dependent rect. 24 15
407 30.01 atmosphere 995.0 43200 < th dose independent rect. 21 1
426 30.01 atmosphere 995.0 43200 < th dose dependent rect. 21 1
453 30.02 atmosphere 995.0 43200 > th dose independent rect. 22 1
479 30.03 radiation 10.0 43200 > th dose independent sin 9 NA
521 30.03 wind 1.0 270 < th dose dependent rect. 8 18
529 30.04 humidity 90.0 14400 > th dose dependent rect. 4 3
537 30.04 radiation 20.0 4320 > th dose dependent rect. 16 16
539 30.04 atmosphere 995.0 43200 < th dose dependent rect. 1 23
565 30.06 humidity 70.0 43200 < th dose independent rect. 18 1
583 30.07 wind 1.0 14400 > th dose independent rect. 23 3
605 30.07 wind 3.0 43200 > th dose dependent rect. 21 6
621 30.08 wind 5.0 43200 < th dose independent rect. 18 12
624 30.08 humidity 90.0 14400 > th dose dependent sin 5 NA
631 30.09 humidity 90.0 14400 > th dose independent rect. 23 1
636 30.09 temperature 20.0 10 > th dose independent rect. 20 9
667 30.10 wind 5.0 43200 > th dose independent rect. 18 12
679 30.10 atmosphere 995.0 43200 < th dose dependent sin 16 NA
681 30.10 wind 1.0 43200 > th dose dependent rect. 1 2
691 30.10 humidity 90.0 14400 > th dose dependent rect. 12 17
717 30.12 radiation 40.0 43200 > th dose independent rect. 13 1
749 30.13 humidity 90.0 43200 > th dose independent rect. 10 4
750 30.13 radiation 30.0 4320 < th dose independent rect. 16 16
755 30.13 wind 1.0 14400 < th dose dependent rect. 11 1
794 30.14 radiation 10.0 4320 > th dose dependent rect. 5 3
818 30.15 wind 7.0 43200 < th dose independent sin 10 NA
863 30.15 precipitation 0.1 43200 > th dose dependent rect. 19 3
929 30.18 radiation 20.0 43200 > th dose independent sin 3 NA
941 30.18 wind 7.0 43200 < th dose independent rect. 17 15
964 30.19 wind 7.0 43200 > th dose independent sin 10 NA