BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0678800 Os01g0678800|AK062840
         (145 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0678800  Heavy metal transport/detoxification protein d...   177   3e-45
Os06g0618300  Conserved hypothetical protein                       67   4e-12

>Os01g0678800 Heavy metal transport/detoxification protein domain containing
           protein
          Length = 145

 Score =  177 bits (448), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 96/145 (66%), Positives = 96/145 (66%)

Query: 1   MKIVLKVPITCKKCKSCILQIVSRNKGVKSLTFDDEKSTLTXXXXXXXXXXXXKLRHPKK 60
           MKIVLKVPITCKKCKSCILQIVSRNKGVKSLTFDDEKSTLT            KLRHPKK
Sbjct: 1   MKIVLKVPITCKKCKSCILQIVSRNKGVKSLTFDDEKSTLTVIGEVDVVVIVDKLRHPKK 60

Query: 61  GKEKREGYMVEVMAVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKQCAEL 120
           GKEKREGYMVEVMAVS                                     LKQCAEL
Sbjct: 61  GKEKREGYMVEVMAVSDEKKEAEEKKKKDEEEKKKKEKEKEEEEKKKKECAEKLKQCAEL 120

Query: 121 QQCCRACRPYYVAVDDHPGYSCTIV 145
           QQCCRACRPYYVAVDDHPGYSCTIV
Sbjct: 121 QQCCRACRPYYVAVDDHPGYSCTIV 145



>Os06g0618300 Conserved hypothetical protein
          Length = 80

 Score = 67.4 bits (163), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 28/31 (90%), Positives = 30/31 (96%)

Query: 115 KQCAELQQCCRACRPYYVAVDDHPGYSCTIV 145
           K+CAEL +CCRACRPYYVAVDDHPGYSCTIV
Sbjct: 50  KKCAELTKCCRACRPYYVAVDDHPGYSCTIV 80



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.323    0.135    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,210,919
Number of extensions: 65387
Number of successful extensions: 150
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 149
Number of HSP's successfully gapped: 2
Length of query: 145
Length of database: 17,035,801
Length adjustment: 91
Effective length of query: 54
Effective length of database: 12,284,327
Effective search space: 663353658
Effective search space used: 663353658
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 151 (62.8 bits)